Pairwise Alignments

Query, 439 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 528 a.a., two component, sigma54 specific, transcriptional regulator, Fis family (RefSeq) from Desulfovibrio vulgaris Miyazaki F

 Score =  141 bits (356), Expect = 4e-38
 Identities = 106/366 (28%), Positives = 176/366 (48%), Gaps = 32/366 (8%)

Query: 24  VLLIDDDQDVLDSYLHLMSIAGLTAKAVIDPTQAMSHIQPDWNGVVLLDMYMPQLHGMEL 83
           +L+IDD+         +M  +G + +      + + H+  D   VVLLDM MP + G E 
Sbjct: 4   LLVIDDEPGHRLMVRAVMEDSGWSVEEAGSGEEGLEHLAQDRVNVVLLDMRMPGMDGQET 63

Query: 84  LKQIKAVDDKIPVIVITGHGDIPMAVEAVKMGACDFLEKPINPPQLLTLIKQHLELRRSF 143
           L +I+ +   +PV+++T  G +  AV A+K GA D+L KP +  +L  ++++  +  R  
Sbjct: 64  LARIQEMYPGLPVVMLTAFGTVGSAVVAMKKGAFDYLTKPADNEELTAVLEKAWDFGRLL 123

Query: 144 IEQKLLLSR----SVKRELVGKSAQMEQIRSHVAQYALLNRHVVIVGESGCGRHTIAYLI 199
            E + L  R         +VG S  M ++R  + Q       ++I+GESG G+  IA  +
Sbjct: 124 EENENLRRRLSDDDPTAPIVGASQAMCRVRDFIRQAGPSEATILIMGESGTGKELIAQGL 183

Query: 200 HQLTTN-------------NGHLPWVELVASAKTEWSTV----EPKVQESAGGTLLIDHI 242
           H  +                GHL   EL    K  ++        + Q + GGTL +D I
Sbjct: 184 HDASNRADQPLVKVNCAALPGHLLESELFGYMKGAFTGAVRDKPGRFQLARGGTLFLDEI 243

Query: 243 ELLSEEVQRNVVQSLLNQERLNRP---------RTRVIAVIDQPPEQLIAQNQLLPELYY 293
             L  E+Q  ++++L  QER+  P           R+IA  ++  ++ +   +   +L++
Sbjct: 244 GELPLELQSKLLRAL--QERVVEPLGAVRPVPVDVRIIAATNRDLKRAVEAGEFREDLFF 301

Query: 294 LLNQGQIDVPLLRQRPDDIAALFHYFLKQSCYKLGKPMPNVEPHYLALLRAHQWPGNVRE 353
            LN  ++  P LR R +D+  L    L++ C K  K + +V P +L  L  + WPGNVRE
Sbjct: 302 RLNVLEVISPPLRDRLEDLPMLAGRLLERLCRKNKKGIRSVSPEFLDALMRYSWPGNVRE 361

Query: 354 LRNVAE 359
           L NV E
Sbjct: 362 LENVLE 367



 Score = 26.9 bits (58), Expect = 0.002
 Identities = 14/43 (32%), Positives = 23/43 (53%)

Query: 388 VDDYEKQVIEDALFLFSGRVADAANYLQVPRKKLYLRMKKHGL 430
           +DD E+  +  AL +  G     A+ L + R+ L  ++KK GL
Sbjct: 481 LDDAERDALLRALEVHGGHRERTADALGISRRTLQYKLKKFGL 523