Pairwise Alignments

Query, 439 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 450 a.a., two component, sigma54 specific, transcriptional regulator, Fis family from Marinobacter adhaerens HP15

 Score =  219 bits (559), Expect = 1e-61
 Identities = 141/450 (31%), Positives = 234/450 (52%), Gaps = 41/450 (9%)

Query: 23  TVLLIDDDQDVLDSYLHLMSIAGLTAKAVIDPTQAMSHIQPDWNGVVLLDMYMPQLHGME 82
           +V+ +DDD  +  +    +++  L      D   A+ HI  D++GVVL D  MP+++G+E
Sbjct: 5   SVIFVDDDPHIRQAIAQTLTLEELPVSCFEDAPSALGHINADYDGVVLCDYNMPEMNGLE 64

Query: 83  LLKQIKAVDDKIPVIVITGHGDIPMAVEAVKMGACDFLEKPINPPQLLTLIKQHLELRRS 142
           +L +++A+DD IPVI++TG GDI  AV A++ GA DF+EKP +  +L+ L++  LE R  
Sbjct: 65  MLDRLRAIDDTIPVIILTGQGDISTAVTAMQQGAYDFIEKPFDHDELIELLRHALEKRHL 124

Query: 143 FIEQKLLLS--RSVKR---ELVGKSAQMEQIRSHVAQYALLNRHVVIVGESGCGRHTIAY 197
            +E + L +  R + R    ++G S  M+++ + +     ++ ++++ GE+G G+  +A 
Sbjct: 125 ALENRRLKAQLRHLARPGPRMLGDSPLMQKVMATIDPILDISANILLHGETGSGKDALAR 184

Query: 198 LIHQLTTNNGH-------------LPWVELVASAKTEWSTVEP----KVQESAGGTLLID 240
            IH+ +  + H             L   EL       ++  E     K++ +  GTL +D
Sbjct: 185 YIHENSGRSAHNFVAINCGAVPENLIESELFGHEAGAFTGAEKRRIGKIEHAHKGTLFLD 244

Query: 241 HIELLSEEVQRNVVQSLLNQ--ERLNRPR-----TRVIAVIDQPPEQLIAQNQLLPELYY 293
            +E +   +Q  +++ L  Q  ERL   +      R+IA      ++L    +  P+LYY
Sbjct: 245 EVESMPMPLQVKLLRVLEEQRVERLGSNKVQEVDVRIIAATKADLKKLSDDGEFRPDLYY 304

Query: 294 LLNQGQIDVPLLRQRPDDIAALFHYFLKQSCYKLGKPMPNVEPHYLALLRAHQWPGNVRE 353
            LN  ++D+P LR+R +DI  LFH+F+  +  +  +    ++    A L  H WPGNVRE
Sbjct: 305 RLNVVKVDIPPLRERKEDIPLLFHHFVLIAAARYDRESIPLDAGQAARLMQHSWPGNVRE 364

Query: 354 LRNVAELYAIGIVKLAGKERLYNQEEM-------LSPLDELVDDYEKQVIEDALFLFSGR 406
           LRN+AE Y      L G   L   E            L E++D +E+  I  AL    G 
Sbjct: 365 LRNLAERYV-----LLGPAALDENEPADTANVAGRQTLAEMMDGFERSAIISALNASHGS 419

Query: 407 VADAANYLQVPRKKLYLRMKKHGLEKDAFK 436
           + D    L + RK LY +M+KHGL+K  FK
Sbjct: 420 IKDTMVQLGIARKTLYDKMRKHGLDKAQFK 449