Pairwise Alignments

Query, 439 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 462 a.a., two component, sigma54 specific, transcriptional regulator, Fis family from Marinobacter adhaerens HP15

 Score =  148 bits (373), Expect = 4e-40
 Identities = 124/465 (26%), Positives = 221/465 (47%), Gaps = 59/465 (12%)

Query: 21  KSTVLLIDDDQDVLDSYLHLMSIAGLTAKAVIDPTQAMSHIQPDWNGVVLLDMYMPQLHG 80
           K T L++DD+ D+ +     ++  G+T     D T A   ++ +   + L DM +P  +G
Sbjct: 3   KYTALIVDDEPDIRELLEITLTRMGITTLTAPDLTSAQKLLEQNTTHLCLTDMNLPDGNG 62

Query: 81  MELLKQIKAVDDKIPVIVITGHGDIPMAVEAVKMGACDFLEKPINPPQLLTLIKQHLELR 140
           +EL++ I+      PV VIT +G++  A+E++K GA DF+ KP+  P+L  L+   L+L 
Sbjct: 63  IELVQWIQKHSPATPVAVITAYGNMDTAIESLKAGAFDFVSKPVELPRLRELVNSALKLA 122

Query: 141 RSFIEQKLLLSRSVKRELVGKSAQMEQIRSHVAQYALLNRHVVIVGESGCGRHTIAYLIH 200
               + +   +      L+GKS ++ ++R+   + A     V I GESG G+  +A +IH
Sbjct: 123 EPKADAE--DTADEPGLLLGKSPEIRKLRNQTRKLARSQAPVFISGESGSGKELVARMIH 180

Query: 201 Q---------LTTNNGHLPWVELVAS------AKTEWSTVEPK---VQESAGGTLLIDHI 242
                     +  N G +P  EL+ S        +    VE K    + + GGTL +D +
Sbjct: 181 LQGPRREGPFIAVNCGAIP-SELMESEFFGHKKGSFTGAVENKDGLFRSANGGTLFLDEV 239

Query: 243 ELLSEEVQRNVVQSLLNQERLNRP---------RTRVIAVIDQPPEQLIAQNQLLPELYY 293
             L   +Q  +++++  QE+  RP           RV++   +   +L+ +     +L+Y
Sbjct: 240 ADLPLAMQVKLLRAI--QEKAVRPVGDTKEVPVDIRVLSATHKNLPELVQEGSFRQDLFY 297

Query: 294 LLNQGQIDVPLLRQRPDDIAALFHYFLKQSCYKLGKPMPNVEPHYLALLRAHQWPGNVRE 353
            +N  ++ VP LR+RPDDI+ L ++ L++   +      ++ P  +  LR++ +PGNVRE
Sbjct: 298 RINVIELSVPPLRERPDDISLLSNHILERIAKEYECDPASLTPAAVDRLRSYDFPGNVRE 357

Query: 354 LRNVAE----------------------LYAIGIVKLAGKERLYNQEEMLSP-----LDE 386
           L NV E                       +A    ++  + ++ + E +  P     L+ 
Sbjct: 358 LENVLERAFTLCDADQIDADDLHLGNGVQHAASASQIIAEGQVGDGEGIAVPDGEIDLEG 417

Query: 387 LVDDYEKQVIEDALFLFSGRVADAANYLQVPRKKLYLRMKKHGLE 431
            ++  E+Q IE AL         AA  L +  + L  R+KK G+E
Sbjct: 418 YLEKIERQAIEKALEATRWNKTAAAKRLGISFRALRYRLKKLGME 462