Pairwise Alignments

Query, 439 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 459 a.a., C4-dicarboxylate transport transcriptional regulatory protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  202 bits (514), Expect = 2e-56
 Identities = 143/449 (31%), Positives = 232/449 (51%), Gaps = 41/449 (9%)

Query: 23  TVLLIDDDQDVLDSYLHLMSIAGLTAKAVIDPTQAMSHIQPDWNGVVLLDMYMPQLHGME 82
           +VL+IDD+  +    + L  + G+ A A  DP      +  DW GVV+ D+ MPQL G+ 
Sbjct: 11  SVLIIDDEPHIGTVLVQLFELEGIKAFAATDPKGIAKLLDRDWAGVVISDVNMPQLDGIS 70

Query: 83  LLKQIKAVDDKIPVIVITGHGDIPMAVEAVKMGACDFLEKPINPPQLLTLIKQHLELRRS 142
           L++QI+  D  +PV+++TG GDI MAV A+K GA DFLEKP N   +L ++K+ L+ R  
Sbjct: 71  LMQQIREQDADLPVVLLTGFGDIAMAVNALKQGAYDFLEKPFNNEHMLDVVKRALDKRSL 130

Query: 143 FIEQKLLLSRSVKREL----------VGKSAQMEQIRSHVAQYALLNRHVVIVGESGCGR 192
            +E     +R +K+EL          +G S  ++++R  + Q       V+I GE+G G+
Sbjct: 131 TLE-----NRKLKKELESHNVPGPRILGHSVGIQRMRHIIDQVIDTPADVLIEGETGTGK 185

Query: 193 HTIAYLIHQLTTNN---------GHLP----WVELVASAKTEWSTVEP----KVQESAGG 235
             +A  +H  +  N         G +P      EL  +    ++ V+     K + + GG
Sbjct: 186 ELVARYLHDHSNRNQANFVAINCGAIPENLIESELFGAEAGAFTGVDKLRIGKFEYANGG 245

Query: 236 TLLIDHIELLSEEVQRNVVQSLLNQ--ERLNRPRT-----RVIAVIDQPPEQLIAQNQLL 288
           TL +D IE     +Q  +++ L ++  ERL   ++     RVIA      + L    Q  
Sbjct: 246 TLFLDEIESTPLSLQVKLLRVLEDRKVERLGSNKSIHLDIRVIAATKVDLKSLCDTGQFR 305

Query: 289 PELYYLLNQGQIDVPLLRQRPDDIAALFHYFLKQSCYKLGKPMPNVEPHYLALLRAHQWP 348
            +L Y LN   + +P LR R +DI  LF +F + +  +  K +  +     A+L +H WP
Sbjct: 306 QDLLYRLNLVTVPIPPLRDRREDIPLLFLHFARMASARYHKALIALNAEQNAILTSHDWP 365

Query: 349 GNVRELRNVAELYAIGIVKLAGKERLYNQEEMLSPLDEL--VDDYEKQVIEDALFLFSGR 406
           GNVRELRN+AE Y +   + A    L N   + + +  L  V+ +E+ +IE+AL    G 
Sbjct: 366 GNVRELRNLAERYVLLGGEAAFAGTLGNAPSLHTSMSLLQRVEFFERVLIEEALSHNKGS 425

Query: 407 VADAANYLQVPRKKLYLRMKKHGLEKDAF 435
           +      L++PRK LY +M+K+ L++  +
Sbjct: 426 IKLTMEQLELPRKTLYDKMRKYDLDRKQY 454