Pairwise Alignments

Query, 439 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 467 a.a., sigma-54 dependent DNA-binding response regulator (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  175 bits (443), Expect = 3e-48
 Identities = 133/460 (28%), Positives = 217/460 (47%), Gaps = 49/460 (10%)

Query: 24  VLLIDDDQDVLDSYLHLMS--IAGLTAKAVIDPTQAMSHIQPDWNGVVLLDMYMPQLHGM 81
           +L++DD+ D       L+S      +    +   +A+  IQ     ++L D+ MP + GM
Sbjct: 9   ILIVDDEPDFAHGLARLVSRDFPAASVSVALSGAEALHIIQGSGVALLLTDLRMPDMDGM 68

Query: 82  ELLKQIKAVDDKIPVIVITGHGDIPMAVEAVKMGACDFLEKPINPPQLLTLIKQHLELRR 141
           EL++Q   VD    VI++T HG I  AV A+K GA DFL KP+   +L   + + LE  R
Sbjct: 69  ELMQQAMTVDPTTSVILLTAHGSIETAVAALKNGAYDFLTKPVRREELQRTLNKALERIR 128

Query: 142 SFIEQK----LLLSRSVKRELVGKSAQMEQIRSHVAQYALLNRHVVIVGESGCGRHTIAY 197
              E K    ++    ++R+++G+S  M++++  +A  A  +  V+I GESG G+  +A 
Sbjct: 129 ILKENKRLRQMMQQGCIERQMIGESPVMQRLKETIAAIAATDYSVLIRGESGTGKELVAD 188

Query: 198 LIHQLTTNN-------------GHLPWVELVASAKTEWS----TVEPKVQESAGGTLLID 240
           ++H+L +                 L   EL    K  ++    T       +  GTLL+D
Sbjct: 189 MLHRLGSRRERPLVKVNCPSIPDQLLESELFGHVKGAFTGADRTRRGLFMSAQRGTLLLD 248

Query: 241 HIELLSEEVQRNVVQSLLNQERLNRP---------RTRVIAVIDQPPEQLIAQNQLLPEL 291
            I  + E +Q  +++ L  QER  RP           R+IA  ++  E+ I Q     +L
Sbjct: 249 EIGDIGEALQTKLLRVL--QEREIRPVGSSASTLVDVRIIASTNRALEERIKQGLFREDL 306

Query: 292 YYLLNQGQIDVPLLRQRPDDIAALFHYFLKQSCYKLGKPMPNVEPHYLALLRAHQWPGNV 351
           +Y LN   I  P LR+R DDI  L  +F+  +C +L  P+  + P  LA L   +WPGNV
Sbjct: 307 FYRLNVLTIHTPPLRERRDDIPLLADHFVAATCRELSSPVKRISPGALACLAGREWPGNV 366

Query: 352 RELRNVAE---LYAIGIVKLAGKERLYN--------QEEMLSPLDE----LVDDYEKQVI 396
           REL+N      ++  G        RL +        +   L P  E    +V+D+ ++ +
Sbjct: 367 RELQNYIRRLVVFCPGDTIDTAHLRLVDGTTCPTTAETPSLVPYKEAKGAVVEDFTRRYV 426

Query: 397 EDALFLFSGRVADAANYLQVPRKKLYLRMKKHGLEKDAFK 436
           E  L    G +++AA    + R  L   +++ G   D FK
Sbjct: 427 EGLLRQTGGNISEAARLSGIERVSLQKILRRLGTSGDTFK 466