Pairwise Alignments

Query, 439 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 476 a.a., sigma-54 dependent transcriptional regulator/response regulator (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  157 bits (398), Expect = 5e-43
 Identities = 124/467 (26%), Positives = 216/467 (46%), Gaps = 59/467 (12%)

Query: 24  VLLIDDDQDVLDSYLHLMSIAGLTAKAVIDPTQAMSHIQPDWNGVVLLDMYMPQLHGMEL 83
           +L++DDD  +  S+  L+++ G   +      Q +  ++ +    V++D+ MP ++G++ 
Sbjct: 4   ILIVDDDHQLRQSFQRLLAVEGHDVRGASSGEQGLRMVREELPECVIMDVRMPGMNGLDA 63

Query: 84  LKQIKAVDDKIPVIVITGHGDIPMAVEAVKMGACDFLEKPINPPQLLTLIKQHLELRRSF 143
           LK ++ +D ++PVI++T +     A+EA K GA D++ KP + P +L LI + +E  R  
Sbjct: 64  LKALREIDARLPVIIMTAYATTETAIEATKFGAFDYILKPFDIPDILALIDKAVEAGRRM 123

Query: 144 IEQKLLLSR----SVKRELVGKSAQMEQIRSHVAQYALLNRHVVIVGESGCGRHTIAYLI 199
             +  +            LVG S  M ++   + + A  +  V++ GESG G+  +A  I
Sbjct: 124 RGRVAMTPEPGDGGDAEALVGTSRAMHEVYKAIGRAAPTDALVLVRGESGTGKELVARAI 183

Query: 200 HQ---------LTTNNGHLPWV----ELVASAKTEWSTVE----PKVQESAGGTLLIDHI 242
           +Q         L  N   +P      EL    K  ++        K+++++GGT+ +D I
Sbjct: 184 YQHSLRAERPYLVINCVAIPDTLLESELFGYEKGAFTGATHRRVGKIEQASGGTVFLDEI 243

Query: 243 ELLSEEVQRNVVQSLLNQ--ERLNRPRT-----RVIAVIDQPPEQLIAQNQLLPELYYLL 295
             +   +Q  +++ L  +  ERL    T     R+IA  +   E  +A  +   +LYY L
Sbjct: 244 GDMPLGIQAKLLRLLQERQIERLGGRETIPVDVRIIAATNTDLEAAVADGRFREDLYYRL 303

Query: 296 NQGQIDVPLLRQRPDDIAALFHYFLKQSCYKLGKPMPNVEPHYLALLRAHQWPGNVRELR 355
               + +P LR+R +DI  L  +FL +   ++  P P +    LA + AH WPGNVREL 
Sbjct: 304 KVVTLWLPPLRERREDIPPLARFFLSRFAREMDTPDPGISTEALAYMEAHPWPGNVRELG 363

Query: 356 NV---AELYAIGIVKL-----------------------AGKERLYNQEEMLSPLDE--- 386
           N    A ++  G   L                       AG + L      LS  D+   
Sbjct: 364 NAIQKALVFNRGAPLLPEDIRQALEGVRGSTSTREGDEGAGDDLLQLVRRTLSGGDDNAF 423

Query: 387 --LVDDYEKQVIEDALFLFSGRVADAANYLQVPRKKLYLRMKKHGLE 431
             ++D   + V+ +AL    G    AA  L + R  L  RM+++GL+
Sbjct: 424 ETIMDHVGRIVVREALQYTGGNRTRAARLLGMSRPTLLARMERYGLK 470