Pairwise Alignments

Query, 439 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 459 a.a., sigma-54 dependent transcriptional regulator/response regulator (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  150 bits (379), Expect = 8e-41
 Identities = 122/452 (26%), Positives = 216/452 (47%), Gaps = 47/452 (10%)

Query: 24  VLLIDDDQDVLDSYLHLMSIAGLTAKAVIDPTQAMSHIQPDWNGVVLLDMYMPQLHGMEL 83
           +L+IDD+++ L     L++ AG    A+ DP  A++ ++     VV+ DM MP++ G E+
Sbjct: 7   ILVIDDEKNYLLVLEALLTDAGYAVTALNDPETALAFLEESEVDVVITDMKMPRVTGREV 66

Query: 84  LKQIKAVDDKIPVIVITGHGDIPMAVEAVKMGACDFLEKPINPPQLLTLIKQHLELRRSF 143
           L+++K     IPV ++T  G I  AV+ +K GA D++ KP +  +LL  ++   EL R  
Sbjct: 67  LERVKKTWPHIPVCIMTAFGSIEGAVDVMKYGAFDYITKPFSNDELLLSVQNAAELSRVH 126

Query: 144 IEQKLLLSRSVKR----ELVGKSAQMEQIRSHVAQYALLNRHVVIVGESGCGRHTIAYLI 199
            + + L +   +R    +++G+S  + ++   V + A     V+I GESG G+  +A  I
Sbjct: 127 RQYRALRANLEERYGTHQIIGRSKAIREVLDMVDRAAPSRSTVLITGESGTGKELVARAI 186

Query: 200 HQLTTNNGHLPWV--------------ELVASAKTEWSTV----EPKVQESAGGTLLIDH 241
           H  +  N   P+V              EL    K  ++        + +++ GGTL +D 
Sbjct: 187 HFSSPRNSG-PFVSVNCMALNPGVLESELFGHEKGSFTGAMAMRRGRFEQADGGTLFLDE 245

Query: 242 IELLSEEVQRNVVQSLLNQERLNR--------PRTRVIAVIDQPPEQLIAQNQLLPELYY 293
           I  L+ E+Q  +++ +L + R  R           RV+A  ++  ++ +       +LYY
Sbjct: 246 IGELTPELQVKLLR-VLQERRFERVGGGDEIEVDIRVVAATNKDLQKEVENGTFREDLYY 304

Query: 294 LLNQGQIDVPLLRQRPDDIAALFHYFLKQSCYKLGKPMPNVEPHYLALLRAHQWPGNVRE 353
            LN   + +P LR+R +DI  L  +F+++     G       P     L  ++WPGN+R+
Sbjct: 305 RLNVVHVALPPLRERREDIPLLVGHFVEKLARDNGMKPKTFTPEAHDYLTGYEWPGNIRQ 364

Query: 354 LRNVAELY-------AIGIVKLAGKER-----LYNQEEMLSPLDELVDDYEK---QVIED 398
           L+NV E          +G+  L  + R     L +  ++L    +L D  EK    +I  
Sbjct: 365 LQNVVERCLVLVASDTVGVDDLPPEIRDEESQLKSAVDLLPVRLDLADTLEKIEAALIRR 424

Query: 399 ALFLFSGRVADAANYLQVPRKKLYLRMKKHGL 430
           AL         AA  L + +  L  ++KK+G+
Sbjct: 425 ALVRAEFVQVKAAELLGISKSLLQYKLKKYGI 456