Pairwise Alignments

Query, 439 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 472 a.a., sigma-54 dependent transcriptional regulator/response regulator (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  161 bits (407), Expect = 5e-44
 Identities = 119/369 (32%), Positives = 186/369 (50%), Gaps = 30/369 (8%)

Query: 20  MKSTVLLIDDDQDVLDSYLHLMSIAGLTAKAVIDPTQAMSHIQPDWNGVVLLDMYMPQLH 79
           M + +L+IDD+ D+  S   ++   G       D    +  +  D   VV LD++MP + 
Sbjct: 1   MPARILIIDDEDDIRFSLRGILEDEGHEVTEAPDGEAGLRTLASDTPDVVFLDIWMPGMD 60

Query: 80  GMELLKQIKAVDDKIPVIVITGHGDIPMAVEAVKMGACDFLEKPINPPQLLTLIKQHLEL 139
           G+ +L+ I A    +PVI+I+GHG I  AV A+K GA DF+EKP++  +++   ++ LE+
Sbjct: 61  GLTVLEHIHAAAPSLPVIMISGHGTIETAVAAIKKGAHDFIEKPLSLEKVVIAAERALEM 120

Query: 140 RRSFIEQKLLLSR----SVKRELVGKSAQMEQIRSHVAQYALLNRHVVIVGESGCGRHTI 195
           R    E + L S     S   EL+G+SA M +IR  +A+ A  +  V+I GE+G G+   
Sbjct: 121 RELRRENQALRSSLGAGSKADELIGESAPMRRIREQIARVAPTDAWVLITGENGTGKELA 180

Query: 196 AYLIHQ---------LTTNNGHLP----WVELVASAKTEWSTVEP----KVQESAGGTLL 238
           A  +H          +  N   +P      EL    K  ++  E     K + +  GTL 
Sbjct: 181 ARAVHAGSQRATRPLVAVNCAAIPEELIESELFGHEKGAFTGAESARTGKFEMAHRGTLF 240

Query: 239 IDHIELLSEEVQRNVVQSLLNQ--ERLNRPRT-----RVIAVIDQPPEQLIAQNQLLPEL 291
           +D I  +S + Q  +++ L  Q  E++   RT     RV+A  ++  E+ IAQ     +L
Sbjct: 241 LDEIGDMSLKTQAKILRILQEQSFEKVGGTRTIRVDVRVVAATNKNLEEQIAQGTFREDL 300

Query: 292 YYLLNQGQIDVPLLRQRPDDIAALFHYFLKQSCYKLG-KPMPNVEPHYLALLRAHQWPGN 350
           YY L    + +P LR+R DDI  L   F+ + C      P+   +     LLR ++WPGN
Sbjct: 301 YYRLRVFPLSLPALRERGDDILRLLDAFMLRLCRDHAFAPLTFTDDAQDVLLR-YRWPGN 359

Query: 351 VRELRNVAE 359
           VRELRN  E
Sbjct: 360 VRELRNFVE 368