Pairwise Alignments

Query, 439 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 462 a.a., sigma-54 dependent transcriptional regulator/response regulator (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  153 bits (387), Expect = 1e-41
 Identities = 126/454 (27%), Positives = 222/454 (48%), Gaps = 46/454 (10%)

Query: 20  MKSTVLLIDDDQDVLDSYLHLMSIAGLTAKAVIDPTQAMSHIQPDWNGVVLLDMYMPQLH 79
           MK  +LLI+DD          +   G    AV      +  ++     +VL D+ +P + 
Sbjct: 1   MKGHILLIEDDTAFQGMLREALEERGYRVTAVNRAEDGVRIVRSGDFDLVLTDVMLPGIS 60

Query: 80  GMELLKQIKAVDDKIPVIVITGHGDIPMAVEAVKMGACDFLEKPINPPQLLTLIKQHLEL 139
           G+E + +++       ++V+T      +A+EAVK+GA DF  KP +  +L  +I++ +E 
Sbjct: 61  GVEAIPRLREAAPGTDIVVMTAFSTRELALEAVKLGAYDFFSKPFSLKELDIVIRRAMEK 120

Query: 140 RRSFIEQKLLLSRSVKRE-----LVGKSAQMEQIRSHVAQYALLNRHVVIVGESGCGRHT 194
           RR   E  + L  +++R+     +VG+S  M  +++ + + A L   V+I+GESG G+  
Sbjct: 121 RRMQGEI-VALRETLRRDTPTSRIVGESRAMRDVKALLERIAPLESTVLIMGESGTGKEL 179

Query: 195 IAYLIHQLTTNNGHLPWVELVASAKTEW-----------------STVEP-KVQESAGGT 236
           IA  I  L+    + P+V++  +A  E                  +T  P K +++ GG 
Sbjct: 180 IADTIRALSPRAAN-PFVKVNCAAIPEHLFENELFGHEKGAFTGAATAMPGKFEQAQGGM 238

Query: 237 LLIDHIELLSEEVQRNVVQSLLNQERLNRPR--------TRVIAVIDQPPEQLIAQNQLL 288
           +++D I  +   +Q  +++ ++ Q+++ R           R+IA  +Q   + + +    
Sbjct: 239 IMLDEIGDMPLAIQPKLLR-VVEQKQVERLGGRAPVPLDVRIIAATNQNLAERVREKAFR 297

Query: 289 PELYYLLNQGQIDVPLLRQRPDDIAALFHYFLKQSCYKLGKPMPNVEPHYLALLRAHQWP 348
            +LYY L+   + +P LR R DDI  L  YF+ +    LG P+  + P  +A+L  H WP
Sbjct: 298 EDLYYRLSVAVVLIPPLRDRKDDIPLLAQYFVNKLEGTLGLPVHGLSPDAIAVLMDHDWP 357

Query: 349 GNVRELRNVAELYAIG---------IVKLAGKERLYNQEE-MLSPLD--ELVDDYEKQVI 396
           GNVR+L NV E  AI          ++   G  R  N ++  LS +D    +   E+ +I
Sbjct: 358 GNVRQLANVLERAAIAADGLICARDVMAAIGTARGSNVDKATLSGMDLKTTLRMVERNLI 417

Query: 397 EDALFLFSGRVADAANYLQVPRKKLYLRMKKHGL 430
            DAL    GR  +AA  L +  K L+ +++KHG+
Sbjct: 418 LDALRRCHGRQTEAAVLLGLTPKNLWAKLRKHGI 451