Pairwise Alignments

Query, 439 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 459 a.a., sigma-54 dependent transcriptional regulator/response regulator (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  159 bits (403), Expect = 1e-43
 Identities = 127/414 (30%), Positives = 200/414 (48%), Gaps = 49/414 (11%)

Query: 68  VVLLDMYMPQLHGMELLKQIKAVDDKIPVIVITGHGDIPMAVEAVKMGACDFLEKPINPP 127
           VVLLDM MP + G E L +I  +   +PV+++T +G +  AVEA+K GA D+L KP +  
Sbjct: 48  VVLLDMRMPGMDGQETLARILEIQPGLPVVMLTAYGTVGSAVEAMKCGAFDYLTKPADNE 107

Query: 128 QLLTLIKQHLELRRSFIEQKLLLSRSVKRE----LVGKSAQMEQIRSHVAQYALLNRHVV 183
           +L+ ++++  E RR  +E + L  R V+ +    LVG S  M ++R  + Q       V+
Sbjct: 108 ELVAVLEKAWEHRRLVVENEELRKRYVENDPTAPLVGASQVMHRMRDFIRQAGPSEATVL 167

Query: 184 IVGESGCGRHTIAYLIHQLTTN-------------NGHLPWVEL---VASAKTEWSTVEP 227
           I+GESG G+  IA  +H  +T               GHL   EL   V  A T     +P
Sbjct: 168 IMGESGTGKELIAQALHDASTRARQPLVKVNCAALPGHLLESELFGYVRGAFTGAVKDKP 227

Query: 228 -KVQESAGGTLLIDHIELLSEEVQRNVVQSLLNQERLNRP---------RTRVIAVIDQP 277
            + Q + GGTL +D I  L  E+Q  +++ L  QER+  P           R+IA  ++ 
Sbjct: 228 GRFQLARGGTLFLDEIGELPLELQAKLLRVL--QERVVEPLGGVRPVSVDVRIIAATNRD 285

Query: 278 PEQLIAQNQLLPELYYLLNQGQIDVPLLRQRPDDIAALFHYFLKQSCYKLGKPMPNVEPH 337
             + +A+     +LY+ LN  ++  P LR+R +D+  L    L + C K  K +  +   
Sbjct: 286 LRREVAKGTFREDLYFRLNVLEVVSPPLRKRMEDLPQLVEELLGKLCRKNRKSIRCISAD 345

Query: 338 YLALLRAHQWPGNVRELRNVAELYAI-----GIVKLAGKERLYNQEEMLSPLDE------ 386
           +   L  H WPGNVREL NV E   I      +   A   +L+  E  ++ + +      
Sbjct: 346 FFEALSRHSWPGNVRELENVLERALILSRTDSLSADALPPQLFGDEPQVADMQQERPVVD 405

Query: 387 ------LVDDYEKQVIEDALFLFSGRVADAANYLQVPRKKLYLRMKKHGLEKDA 434
                  +D+ EK  +  AL +  G     A+ L + R+ L  ++KK GL + A
Sbjct: 406 DDSRPCSLDEAEKGELLRALDVHGGHREKTADALGISRRTLQYKLKKFGLTRRA 459