Pairwise Alignments

Query, 439 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 454 a.a., two component, sigma54 specific, transcriptional regulator, Fis family (RefSeq) from Dinoroseobacter shibae DFL-12

 Score =  140 bits (353), Expect = 8e-38
 Identities = 105/345 (30%), Positives = 172/345 (49%), Gaps = 6/345 (1%)

Query: 20  MKSTVLLIDDDQDVLDSYLHLMSIAGLTAKAVIDPTQAMSHIQPDWNGVVLLDMYMPQLH 79
           M  TVL+ DDD+ +       ++ AG    A       M  ++     +V+ D+ MP  +
Sbjct: 1   MDGTVLVADDDRTIRTVLTQALTRAGCKVHATSSLMTLMRWVEEGKGDLVISDVIMPDGN 60

Query: 80  GMELLKQIKAVDDKIPVIVITGHGDIPMAVEAVKMGACDFLEKPINPPQLLTLIKQHLEL 139
           G+E L +I      +PVIVI+    I  A++A +  A D+L KP + P L+    + LE+
Sbjct: 61  GLETLPKITEARPGLPVIVISAQNTIMTAIQAAEAEAYDYLPKPFDLPDLMKRAARALEV 120

Query: 140 RRSFIEQKLLL-SRSVKRELVGKSAQMEQIRSHVAQYALLNRHVVIVGESGCGRHTIAYL 198
           +R     KL   S +    LVG++ QM+ +   VA+    +  V+I GESG G+  IA  
Sbjct: 121 KRRAPPPKLSSESPNEDLPLVGRTPQMQALYRLVARVMNTDLPVLITGESGTGKSLIARA 180

Query: 199 IHQLTTNNGHLPWVELVASAKTEWSTVEPKVQESAGGTLLIDHIELLSEEVQRNVVQSLL 258
           IH   ++   LP+V   A+           V ++ GG++L D +  L +E Q  +V+ +L
Sbjct: 181 IHDF-SDRRTLPFVVAGAADLAGADGPSTLVAKARGGSILFDEVGDLDDEAQGRIVR-ML 238

Query: 259 NQERLNRPRTRVIAVIDQPPEQLIAQNQLLPELYYLLNQGQIDVPLLRQRPDDIAALFHY 318
           +Q   N P  R+++   +   Q +       +L+Y L    I+VP LR+R DDI  L  +
Sbjct: 239 DQFGDNSP--RIMSTSQKDLMQKMEAGIFRQDLFYRLGGVTINVPSLRERVDDIPLLATH 296

Query: 319 FLKQSCYKLGKPMPNVEPHYLALLRAHQWPGNVRELRNVAELYAI 363
           FL ++  + G P+  +      ++RA+ WPGNVR+L N  +   I
Sbjct: 297 FLARA-ERDGAPLKRLSEAASDMVRAYSWPGNVRQLENAMKRLVI 340