Pairwise Alignments

Query, 439 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 471 a.a., two component, sigma54 specific, transcriptional regulator, Fis family (RefSeq) from Dinoroseobacter shibae DFL-12

 Score =  154 bits (388), Expect = 7e-42
 Identities = 121/449 (26%), Positives = 216/449 (48%), Gaps = 52/449 (11%)

Query: 24  VLLIDDDQDVLDSYLHLMSIAGLTAKAVIDPTQAMSHIQPDWNGVVLLDMYMPQ--LHGM 81
           +L+IDD++D+ +    ++   G   + V      M  I+    G+++LD+++    + G+
Sbjct: 4   ILIIDDEKDIRELVSDILQDEGYATRTVGTAEDCMDQIEAQPPGLMILDIWLKDSSMDGI 63

Query: 82  ELLKQIKAVDDKIPVIVITGHGDIPMAVEAVKMGACDFLEKPINPPQLLTLIKQHLE--- 138
           ++L ++K    +IP+++I+GHG+I +AV A+K GA DF+EKP N  QLL ++K+ +E   
Sbjct: 64  DILVRVKRERPEIPIVIISGHGNIEIAVAAIKQGAYDFIEKPFNIDQLLLVVKRAMETSK 123

Query: 139 LRRSFIEQKLLLSRSVKRELVGKSAQMEQIRSHVAQYALLNRHVVIVGESGCGRHTIAYL 198
           LRR   E K      V  +L+G SA M+ +RS + +    N  V++ G SG G+   A  
Sbjct: 124 LRRENAELK--RQGPVATDLLGNSAAMKTLRSQLDKVTRSNGRVMLTGPSGSGKEVAARY 181

Query: 199 IHQ---------LTTNNGHLP---WVELVASAKTEWSTVEPKVQESA-GGTLLIDHIELL 245
           IH          ++ N+  +      E++   +    +VE  + E A GG +  D +  +
Sbjct: 182 IHANSARASGPFVSVNSAAIEADRMEEVLFGREGPDKSVEKGLLELADGGVIFFDEVADM 241

Query: 246 SEEVQRNVVQSLLNQE-------RLNRPRTRVIAVIDQPPEQLIAQNQLLPELYYLLNQG 298
               Q  +++ L++Q+       +  +   RVI+      E  +A  +L  EL++ LN  
Sbjct: 242 PAGTQSKILRVLVDQQFQRVGGTQKVKVDLRVISSSTTDLEAEVASGRLRQELFHRLNVV 301

Query: 299 QIDVPLLRQRPDDIAALFHYFLKQSCYKLGKPMPNVEPHYLALLRAHQWPGNVRELRNVA 358
            I VP L +R +DI  L  +F+       G     +     A+L+  +WPGNVR+L+NV 
Sbjct: 302 PITVPSLDERREDIPVLARHFIAHFNETQGLAARELGAEAEAMLQTMRWPGNVRQLKNVM 361

Query: 359 ELYAIGIVKLAGKERLYNQEEMLS---------------------PLDELVDDYEKQVIE 397
           E   I    L   E   + EE+ S                     PL E  + +E++ + 
Sbjct: 362 ERVLI----LGTGEGEISPEELPSAGPEAEADGATGLVSGTLATLPLREARELFEREYLM 417

Query: 398 DALFLFSGRVADAANYLQVPRKKLYLRMK 426
             +  F G ++  A ++ + R  L+ ++K
Sbjct: 418 TQINRFGGNISRTAAFVGMERSALHRKLK 446