Pairwise Alignments

Query, 439 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 441 a.a., two component, sigma54 specific, transcriptional regulator, Fis family (RefSeq) from Dinoroseobacter shibae DFL-12

 Score =  217 bits (553), Expect = 5e-61
 Identities = 136/433 (31%), Positives = 228/433 (52%), Gaps = 26/433 (6%)

Query: 24  VLLIDDDQDVLDSYLHLMSIAGLTAKAVIDPTQAMSHIQPDWNGVVLLDMYMPQLHGMEL 83
           + ++DD+QD+  S    ++++G   +      +A+  I+  + G+VL D+ MP + GM L
Sbjct: 7   IAIVDDEQDMRQSISQWLALSGYDTETYASAEEALKGIEAGYPGIVLSDIKMPGMDGMAL 66

Query: 84  LKQIKAVDDKIPVIVITGHGDIPMAVEAVKMGACDFLEKPINPPQLLTLIKQHLELRRSF 143
           LK++ ++D  +PVI+ITGHGD+PMAVEA+++GA DFLEKP NP ++  L K+  + RR  
Sbjct: 67  LKRLMSMDSALPVIMITGHGDVPMAVEAMRLGAFDFLEKPFNPDRMSALAKRASDTRRLT 126

Query: 144 IEQKLLL-----SRSVKRELVGKSAQMEQIRSHVAQYALLNRHVVIVGESGCGRHTIAYL 198
           +E + L         + R+L+G S  M ++R  +      + HV+I GE+G G+  +A+ 
Sbjct: 127 LENRALRRELGDGTVLMRKLIGASPAMARLREDILDLGQADGHVLIDGETGTGKTLVAHA 186

Query: 199 IHQLTTNNGHLPWVELVAS---------AKTEWSTVEPKVQESAGGTLLIDHIELLSEEV 249
           +H +    G    V+  A+            E     P V+++  GTL ++ IE +  EV
Sbjct: 187 LHAVGPRAGKPFVVQSCAAVDDLEKRLFGPAEEGMPLPLVEQARSGTLCLEDIEAMPSEV 246

Query: 250 QRNVVQSLLNQERLNRPRTRVIAVIDQPPEQLIAQNQLLPELYYLLNQGQIDVPLLRQRP 309
           Q  ++  L   +      TR+IA+ +   +    +++L P+L+Y L   +I +P LRQR 
Sbjct: 247 QARLLGQL--NDTSAGIETRIIAICNLAEDGKTIEDRLRPDLFYRLAAMRITLPPLRQRG 304

Query: 310 DDIAALFHYFLKQSCYKLGKPMPNVEPHYLALLRAHQWPGNVRELRNVAELYAIGIVKLA 369
           +DI  LF ++    C + G   P V     A L    WPGNVR+L NVAE   +   + +
Sbjct: 305 EDILTLFSHYADMFCEEYGCDAPQVAAQEAAQLLQAPWPGNVRQLINVAERAVLQNRRGS 364

Query: 370 GKER---LYNQEEM-------LSPLDELVDDYEKQVIEDALFLFSGRVADAANYLQVPRK 419
           G      + +  EM         PL E V+ +E+ +I++ +    G +A     L +PR+
Sbjct: 365 GSITSLLMADNAEMGPAITTEGKPLKEYVEAFERMLIDNTMRRHKGSIAAVMEELCLPRR 424

Query: 420 KLYLRMKKHGLEK 432
            L  +M K+GL +
Sbjct: 425 TLNEKMAKYGLSR 437