Pairwise Alignments

Query, 439 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 488 a.a., AAA-family response regulator tacA from Caulobacter crescentus NA1000

 Score =  147 bits (372), Expect = 6e-40
 Identities = 124/489 (25%), Positives = 222/489 (45%), Gaps = 73/489 (14%)

Query: 20  MKSTVLLIDDDQDVLDSYLHLMSIAGLTAKAVIDPTQAMSHIQPDWNG-VVLLDMYMPQL 78
           M  TVL++DDD         ++   G           A++H+       V+LLD+ MP L
Sbjct: 1   MTKTVLVVDDDPTQRRLIQAVLERDGFAVSHAEGGDAAIAHLTSGAPADVILLDLVMPGL 60

Query: 79  HGMELLKQIKAVDDKIPVIVITGHGDIPMAVEAVKMGACDFLEKPINPPQLLTLIKQHLE 138
           +G + LK+++A     PVIV+T  G +   V+A++ GACDF  KP +P ++   I+  L 
Sbjct: 61  NGQDALKEMRARGFNQPVIVLTASGGVDTVVKAMQAGACDFFIKPASPERITVSIRNALS 120

Query: 139 LRRSFIEQKLLLSRSVKR----ELVGKSAQMEQIRSHVAQYALLNRHVVIVGESGCGRHT 194
           +     E + L  R+  +    +L+G S  M  ++    + A     V+I GESG G+  
Sbjct: 121 MGDLKGEVERLTKRAGGKTTFADLIGASPVMTMVKRMGERAAKSGIPVLITGESGVGKEL 180

Query: 195 IAYLIHQLTTNNGHLPWVELVASAKTEWSTVEP-------------------KVQESAGG 235
           IA  +H  +   G  P+V +   A  E + VE                    K +E+ GG
Sbjct: 181 IARAVHGSSDRAGK-PFVAVNCGAIPE-NLVESILFGHEKGSFTGATDKHLGKFKEADGG 238

Query: 236 TLLIDHIELLSEEVQRNVVQSL-------LNQERLNRPRTRVIAVIDQPPEQLIAQNQLL 288
           TL +D +  L  ++Q  ++++L       +  +R  +   R+++  ++  +Q ++  +  
Sbjct: 239 TLFLDEVGELPLDMQVKLLRALQEGEIDPIGSKRSIKVDVRIVSATNRDLQQAVSGGRFR 298

Query: 289 PELYYLLNQGQIDVPLLRQRPDDIAALFHYFLKQSCYKLGKPMPNVEPHYLALLRAHQWP 348
            +L+Y LN   I+ P LR+R +DI AL   F+++   + GK +    P  + LL +  WP
Sbjct: 299 EDLFYRLNVFPIEAPSLRERREDIPALVEAFIRRFNVEEGKRVIGASPETMQLLTSFDWP 358

Query: 349 GNVRELRN-------------------------VAELYAIGIVKLAGKERLYN------- 376
           GNVR+L N                          A + A+ I        L         
Sbjct: 359 GNVRQLENTVYRAIVLADAPYLQPFDFPAISGLAAPIEAVSISPSPPPAALLQATHAAMA 418

Query: 377 ---QEEMLSPLDE-----LVDDYEKQVIEDALFLFSGRVADAANYLQVPRKKLYLRMKKH 428
               E  +  LD+      +++ E+ +I+ A+ +++G +++ A  L + R  LY ++++ 
Sbjct: 419 AAVAEAPVRILDDRGHLRTLEEIERDLIQHAIDVYAGHMSEVARRLGIGRSTLYRKVREQ 478

Query: 429 GLEKDAFKA 437
           G+E D  +A
Sbjct: 479 GIEVDMKEA 487