Pairwise Alignments

Query, 439 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 462 a.a., nitrogen assimilation regulatory protein ntrX from Caulobacter crescentus NA1000

 Score =  172 bits (437), Expect = 2e-47
 Identities = 127/454 (27%), Positives = 220/454 (48%), Gaps = 44/454 (9%)

Query: 20  MKSTVLLIDDDQDVLDSYLHLMSIAGLTAKAVIDPTQAMSHIQPDWNGVVLLDMYMPQ-- 77
           M + VL++DD+ D+ D    ++   G   +   D  QA++ I+     +++LD++M    
Sbjct: 1   MSADVLVVDDEADIRDLVAGILEDEGYAVRTAADSDQALAAIRARKPALLVLDIWMQGGG 60

Query: 78  LHGMELLKQIKAVDDKIPVIVITGHGDIPMAVEAVKMGACDFLEKPINPPQLLTLIKQHL 137
           + G+ELL  +KA+D  +PVI+I+GHG+I  AV A+K GA +FLEKP    +LL ++++ L
Sbjct: 61  MDGLELLDMVKALDADLPVIMISGHGNIETAVSAIKRGAYEFLEKPFKSDRLLLIVERAL 120

Query: 138 ELRRSFIEQKLLLSRSVKRE-LVGKSAQMEQIRSHVAQYALLNRHVVIVGESGCGRHTIA 196
           E      E + L ++++  + L+GKSA  + +R  + + A  N  V++ G  G G+  +A
Sbjct: 121 EAAGLRRENRRLRAQTLSPDGLIGKSAPAQALRQLILKVAPANSRVLVSGPPGAGKELVA 180

Query: 197 YLIHQLTTNNGHLPWVELVASAKTEWSTVE----------PK----VQESAGGTLLIDHI 242
            LIH  +T           A    E   VE          P+     + + GGTL +D +
Sbjct: 181 RLIHGASTRARQEFVAVSAAGMAPERLDVELFGEEGEGGRPRKIGVFERAHGGTLYLDEV 240

Query: 243 ELLSEEVQRNVVQSLLNQERLNR--------PRTRVIAVIDQPPEQLIAQNQLLPELYYL 294
             +  E Q  +++ L+ Q R  R           RVI+   +     IA  +   +L++ 
Sbjct: 241 ADMPRETQGRILRVLVEQ-RFRRVGGDNDVQVDVRVISSSSRDLRDEIAAGRFREDLFHR 299

Query: 295 LNQGQIDVPLLRQRPDDIAALFHYFLKQSCYKLGKPMPNVEPHYLALLRAHQWPGNVREL 354
           LN   + VP L +R +DI  L +YF+++     G     +    LA L+   WPGNVR+L
Sbjct: 300 LNVVPVRVPGLAERREDIPELINYFVERISEATGLARRRLGEDALATLQVQAWPGNVRQL 359

Query: 355 RN-----------------VAELYAIGIVKLAGKERLYNQEEMLS-PLDELVDDYEKQVI 396
           RN                  AE+ +      AG       E +++ PL E  + +E++ +
Sbjct: 360 RNNVERMLILASGEPGDVITAEMLSGAEQPSAGNAGAIGAERIIALPLREARELFEREYL 419

Query: 397 EDALFLFSGRVADAANYLQVPRKKLYLRMKKHGL 430
              +  F G ++  AN++ + R  L+ ++K  G+
Sbjct: 420 NAQILRFGGNISRTANFIGMERSALHRKLKSLGV 453