Pairwise Alignments

Query, 439 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 457 a.a., rteB, two-component system response regulator (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  153 bits (387), Expect = 9e-42
 Identities = 126/460 (27%), Positives = 224/460 (48%), Gaps = 52/460 (11%)

Query: 20  MKSTVLLIDDDQDVLDSYLHLMSIAGLTAKAVIDPTQAMSHIQPDWNGVVLLDMYMPQLH 79
           M  ++L+I+DD          +S  G    +V +  +A  HI+     ++L D+ +P   
Sbjct: 1   MMKSILIIEDDITFGMMLKTWLSKKGFEVSSVSNIARAQKHIEGQGADLILSDLRLPDHD 60

Query: 80  GMELLKQIKAVDDKIPVIVITGHGDIPMAVEAVKMGACDFLEKPINPPQLLTLIKQHLEL 139
           G++LLK +      IP+I++TG+ DI  AV+A+K+GA D++ KP+NP +LL  + + L+ 
Sbjct: 61  GIDLLKWMNEKGIDIPLIIMTGYADIQSAVQAMKLGARDYVAKPVNPEELLKKMSEALQA 120

Query: 140 RRSFIEQKLLLSRSVKRE--------------LVGKSAQMEQIRSHVAQYALLNRHVVIV 185
           + +        + + K                L G+S   +Q+ ++V   A  N  V+I 
Sbjct: 121 KEAPTTHTAAKTSAKKGSSISSGNATETHHAYLEGESDAAKQLYNYVGLVAPTNMSVLIN 180

Query: 186 GESGCGRHTIAYLIHQLTTNN---------GHLPWVELVAS---AKTEWSTVEPKVQESA 233
           G SG G+  +A+ IHQL+  N         G +P  EL AS      + S       ++ 
Sbjct: 181 GSSGTGKEYVAHRIHQLSKRNDKPFIAVDCGSIP-KELAASEFFGHVKGSFTGALTDKTG 239

Query: 234 ------GGTLLIDHIELLSEEVQRNVVQSLLNQERLNRP---------RTRVIAVIDQPP 278
                 GGT+ +D I  LS EVQ  ++++L  QER  RP           R+++  ++  
Sbjct: 240 AFVAANGGTIFLDEIGNLSYEVQIQLLRAL--QERKIRPVGSTQEVSVDIRLVSATNENL 297

Query: 279 EQLIAQNQLLPELYYLLNQGQIDVPLLRQRPDDIAALFHYFLKQSCYKLGKPMPNVEPHY 338
           EQ I +     +L++ +N+  + +P L++R +DI    ++FL Q+  +L K +   +   
Sbjct: 298 EQAIEKGTFREDLFHRINEFTLRMPDLKERKEDILLFANFFLDQANKELDKHLIGFDSKA 357

Query: 339 LALLRAHQWPGNVRELRNV---AELYAIG----IVKLAGKERLYNQEEMLSPLDELVDDY 391
              L  + WPGN+R+++N+   A L A G    +++L G E L       + +    ++ 
Sbjct: 358 SQALLNYHWPGNLRQMKNIVKRATLLAQGSFITLLEL-GTELLETSTVCSASMALRNEET 416

Query: 392 EKQVIEDALFLFSGRVADAANYLQVPRKKLYLRMKKHGLE 431
           EK+ I +AL       + AA  L + RK LY ++K + ++
Sbjct: 417 EKEHILEALRQTGNNKSKAAQLLNIDRKTLYNKLKLYNID 456