Pairwise Alignments

Query, 439 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 426 a.a., two-component system response regulator (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  139 bits (350), Expect = 2e-37
 Identities = 123/439 (28%), Positives = 206/439 (46%), Gaps = 49/439 (11%)

Query: 24  VLLIDDDQDVLDSYLHLMSIAGLTAKAVIDPTQAMSHIQPDWNGVVLLDMYMPQLHGMEL 83
           +L+I+DD     S  + +   G+    V   + A   +Q     +VL D+ +P    MEL
Sbjct: 4   ILIIEDDVVFSRSISNWLKKKGMATGHVSTLSAARKELQVKKFDLVLADLRLPDGSSMEL 63

Query: 84  LKQIKAVDDKIPVIVITGHGDIPMAVEAVKMGACDFLEKPINPPQLLTLIKQHLELRRSF 143
           LK +K     IP +++T +G +  AVEA+++GA ++L KP+ P +L  +I++     +  
Sbjct: 64  LKWMKGKYYSIPFLIMTSYGQVENAVEAMQLGASNYLCKPVQPDRLWEVIEKEFSRPQHG 123

Query: 144 IEQKLLLSRSVKRELVGKSAQMEQIRSHVAQYALLNRHVVIVGESGCGRHTIAYLIHQLT 203
                  S    R   G+S +  ++   +   A  +  V++ G SG G+  IA  IH+ +
Sbjct: 124 -------STEFYR---GESEKAREMYRLIGPVARSDMSVLLRGASGTGKEHIAAEIHEWS 173

Query: 204 TNNGHLPWVELVASA------KTEW------------STVEPKVQESAGGTLLIDHIELL 245
               H P+V +   A      ++E+            S      Q + GGTL +D I  L
Sbjct: 174 LRR-HKPFVAVDCGAVSDDLVRSEFFGYCKGAFTGADSDKAGLFQAAEGGTLFLDEIGNL 232

Query: 246 SEEVQRNVVQSLLNQERL------NRP-RTRVIAVIDQPPEQLIAQNQLLPELYYLLNQG 298
           +   Q  ++++L  +  L       RP   R+IA  +   E+ IA+     +LY+ LN+ 
Sbjct: 233 APVNQMKLLRALQEKRYLPVGTVRERPFDIRLIAATNADLEKAIAEGSFREDLYHRLNEF 292

Query: 299 QIDVPLLRQRPDDIAALFHYFLKQSCYKLGKPMPNVEPHYLALLRAHQWPGNVRELRNVA 358
            I VPLL +  +DI  L  +FLKQ   + GKP+   +    A+LR + WPGN+REL+N  
Sbjct: 293 TIRVPLLSECGEDILPLAEFFLKQFSARYGKPVQGFDREAAAVLRQYGWPGNIRELKNTV 352

Query: 359 ELYAIGIVKLAGKERLYNQEEMLS---PLDELVDDYEKQVIEDALFLFSGRVAD----AA 411
                  V  AG+ R+  QE  L     L  ++   EK+  E  +    G+  +     A
Sbjct: 353 R----RAVVFAGEGRISAQELNLDQGMKLGNMIVCPEKE--EQQILRILGQTGNNRTLTA 406

Query: 412 NYLQVPRKKLYLRMKKHGL 430
             L + R  LY +++K+G+
Sbjct: 407 RVLGISRTALYYKLRKYGI 425