Pairwise Alignments

Query, 439 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 458 a.a., two-component system response regulator (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  152 bits (383), Expect = 3e-41
 Identities = 127/457 (27%), Positives = 223/457 (48%), Gaps = 58/457 (12%)

Query: 24  VLLIDDDQDVLDSYLHLMSIAGLTAKAVIDPTQA---MSHIQPDWNGVVLLDMYMPQ--- 77
           +L++DD++DVL +   L+       K    P +    M+  QPD   ++LLDM   +   
Sbjct: 10  ILIVDDNEDVLFALNLLLEPYTEKIKVATTPDRIEHFMTTFQPD---LILLDMNFSRDAI 66

Query: 78  --LHGMELLKQIKAVDDKIPVIVITGHGDIPMAVEAVKMGACDFLEKPINPPQLLTLIKQ 135
               G E LKQI  +D +  VI +T + D   AV A+K GA DF+ KP    +LL  +  
Sbjct: 67  SGQEGFESLKQILQIDPQAIVIFMTAYADTDKAVRAIKAGATDFIPKPWEKEKLLATLTS 126

Query: 136 HLELRRSFIEQKLLLSR--------SVKRELVGKSAQMEQIRSHVAQYALLNRHVVIVGE 187
            + LR+S  E  +L  +        S + +++G+S  M+++ + + + +  + +++I+GE
Sbjct: 127 GMRLRQSQREVNILKEQVEALSGQSSPEGDIIGESPIMQEVFATINKLSSTDANILILGE 186

Query: 188 SGCGRHTIAYLIHQLTTNNGHLPWV--------------ELVASAKTEWSTVEP----KV 229
           +G G+  IA L+++ +   G  P+V              EL    K  ++  +     ++
Sbjct: 187 NGTGKDVIARLLYRYSPRYGK-PFVTIDLGSIPEQLFESELFGFEKGAFTDAKKSKAGRM 245

Query: 230 QESAGGTLLIDHIELLSEEVQRNVVQSLLNQE--RLNRPRT-----RVIAVIDQPPEQLI 282
           + +  GTL +D I  LS  +Q  ++ ++  ++  RL   +T     R+I   +     ++
Sbjct: 246 EVATNGTLFLDEIGNLSLPMQSKLLTAIEKRQISRLGSTQTMPIDVRLICATNADIRHMV 305

Query: 283 AQNQLLPELYYLLNQGQIDVPLLRQRPDDIAALFHYFLKQSCYKLGKPMPNVEPHYLALL 342
            +     +L Y +N  +I +P LR+R +DI  L  YFL +   K  K M  +       L
Sbjct: 306 DEGSFRQDLLYRINTIEIHIPPLRERGNDIILLAEYFLDRYARKYKKEMRGLTREAKNKL 365

Query: 343 RAHQWPGNVRELRNVAE-LYAIGIVKLAGKERLY--------NQEEMLSPLDELVDDYEK 393
             + WPGNVREL++  E +  +G   L   E            +EE++  L++L    E+
Sbjct: 366 LKYTWPGNVRELQHTMERVVILGDGSLLKPENFQFHVTPKQKKEEEIVLNLEQL----ER 421

Query: 394 QVIEDALFLFSGRVADAANYLQVPRKKLYLRMKKHGL 430
           Q IE A+ L  G ++ AA+YL + R  LY +++K GL
Sbjct: 422 QTIEKAMKLSEGNISRAADYLGITRFALYRKLEKLGL 458