Pairwise Alignments

Query, 439 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 432 a.a., rteB, two-component system response regulator (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  136 bits (342), Expect = 1e-36
 Identities = 123/452 (27%), Positives = 217/452 (48%), Gaps = 60/452 (13%)

Query: 20  MKSTVLLIDDDQDVLDSYLHLMSIAGLTAKAVIDPTQAMSHIQPDWNGVVLLDMYMPQLH 79
           MKS +L+I+DD     +  + +   G+  + V    +A   I      ++L DM +P  +
Sbjct: 1   MKS-ILIIEDDIVFSRTISNWLVKQGMKTQCVATIAEARRAIAGKPFSLILADMRLPDDN 59

Query: 80  GMELLKQIKAVDDKIPVIVITGHGDIPMAVEAVKMGACDFLEKPINPPQLLTLI---KQH 136
            + LL+ ++     +PVI++T +G++  AV A+K+GA D+L KP+ P  LL LI   K+ 
Sbjct: 60  SLSLLEWMRERRCTVPVIIMTNYGEVENAVTAIKLGATDYLRKPVQPDILLELIVGIKEG 119

Query: 137 LELRRSFIEQKLLLSRSVKRELVGKSAQMEQIRSHVAQYALLNRHVVIVGESGCGRHTIA 196
              + SF                G+SA+ +++   +   A  +  V++ G SG G+  +A
Sbjct: 120 DSGKPSFYR--------------GESAKAQEMYRQIELIACADISVLLRGASGTGKEHVA 165

Query: 197 YLIHQLTTNNGHLPWV---------ELVASA-----KTEWSTVEPK----VQESAGGTLL 238
           + IH+  ++  + P+V         EL AS      K  ++  E       + + GGTL 
Sbjct: 166 HEIHE-RSHRWNKPYVPVDCGTVPEELAASEFFGHLKGAFTGAESDKAGLFRTADGGTLF 224

Query: 239 IDHIELLSEEVQRNVVQSLLNQERLNRPR---------TRVIAVIDQPPEQLIAQNQLLP 289
           +D I  LS   Q  ++++L  QE+  RP           R++A  ++  E+ IA+ +   
Sbjct: 225 LDEIGNLSYRTQVMLLRAL--QEKRYRPLGDTREYPFDIRLVAATNENLEKAIAEGRFRE 282

Query: 290 ELYYLLNQGQIDVPLLRQRPDDIAALFHYFLKQSCYKLGKPMPNVEPHYLALLRAHQWPG 349
           +L++ LN+  I +PLL +  +DI  L  +FL+++  +LGK     +    + L A+QWPG
Sbjct: 283 DLFHRLNEFTIRLPLLAECREDILPLADFFLEEANAELGKRTGGFDREARSRLAAYQWPG 342

Query: 350 NVRELRNV----------AELYAIGIVKLAGKERLYNQEEMLSPLDELVDDYEKQVIEDA 399
           N+RE++N            E  A G +  + +E           L++     EK+ I  A
Sbjct: 343 NMREMKNTVRGAVLLTPDGERIAAGSLAFSVREADGADASETLALNDA--QKEKECIMRA 400

Query: 400 LFLFSGRVADAANYLQVPRKKLYLRMKKHGLE 431
           L    G   +AA  L + R  LY +++K+G +
Sbjct: 401 LEETGGNRKEAARLLGISRSTLYEKLRKYGFQ 432