Pairwise Alignments

Query, 642 a.a., GGDEF domain-containing protein from Vibrio cholerae E7946 ATCC 55056

Subject, 586 a.a., diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) from Pseudomonas fluorescens FW300-N2E2

 Score =  127 bits (319), Expect = 1e-33
 Identities = 88/291 (30%), Positives = 148/291 (50%), Gaps = 17/291 (5%)

Query: 351 SLDSKLARAAMDGMSAVVITDRQNRIIKVNNEFTRLSGYTFEDVKGKQPSIFASGLHKVE 410
           S+D K  RA +D  +    TD   RI  VN++F  L GY  +++ G    +  SG H  E
Sbjct: 4   SMDKKYRRA-VDAAAIFSETDLSGRITYVNDQFCSLFGYRRDELLGVNHRLLNSGQHPDE 62

Query: 411 FYMQMWKALQDNGVWEGEVINKRKDGESI-TEILRIQSIRDEDNVIQFYVASFVDISHRK 469
           F+  MW  +    VW+GE+ N+ KDG     +   +  I D+   ++ Y+A   D+S ++
Sbjct: 63  FFSSMWHTIALGQVWKGEICNRAKDGTLYWVDTTLVPVIDDDTGQVERYLAIRFDVSEKR 122

Query: 470 ALENRLRELSEKDALTDLWNRRKFDQTI--SLECAKRRRYPDQAQSCLAIIDIDHFKRIN 527
            L + L+     D LT L NR      +  +LE ++    P      + ++D+D FK +N
Sbjct: 123 RLLHSLQWRVGHDVLTGLPNRTYLSDLLDQALEFSRAENLP----LAVCMLDLDGFKAVN 178

Query: 528 DKFGHNEGDLVLRTVAKGIQDQLRESDFIARIGGEEFAIIFPYT-SIEEAEQVLNRVRLH 586
           D +GH  GD +L  VA+ ++  +R  D +AR+GG+EF ++  +   ++E    L+RV + 
Sbjct: 179 DGYGHASGDRLLVEVARRLRSIVRGEDVVARLGGDEFVLVLRHVRGMDELHAALSRVLIA 238

Query: 587 IASLH-----HQQVTLSGGVTDVCTSPDQS---YKRADLALYESKTSGRNQ 629
           ++  +       +V  S GVT      + +    + AD A+Y +K SGRN+
Sbjct: 239 VSMPYGIDGKGIKVFASIGVTLFPWDNEDAETLLRHADQAMYVAKQSGRNR 289