Pairwise Alignments

Query, 642 a.a., GGDEF domain-containing protein from Vibrio cholerae E7946 ATCC 55056

Subject, 890 a.a., PAS domain S-box/diguanylate cyclase (GGDEF) domain from Pseudomonas stutzeri RCH2

 Score =  130 bits (326), Expect = 3e-34
 Identities = 83/290 (28%), Positives = 148/290 (51%), Gaps = 14/290 (4%)

Query: 354 SKLARAAMDGMSAVVITDRQNRIIKVNNEFTRLSGYTFEDVKGKQPSIFASGLHKVEFYM 413
           S   RA     SA ++ DR  R+  VN  FT +S ++  +V+G + +   +  +  E   
Sbjct: 339 SLFQRAVEQSASAFILVDRDGRVEYVNPAFTSISQFSAAEVRGHRLTDLKALENLSELLF 398

Query: 414 QMWKALQDNGVWEGEVINKRKDGESITEILRIQSIRDEDNVIQFYVASFVDISHRKALEN 473
                L  +  W+GE  ++RK+ E     L I  + +++ V+  Y+  + DI+  K    
Sbjct: 399 DTSSVLAHSNSWQGEFRSRRKNLEPYWGQLSISKVFNDEGVLTHYIGIYEDITRSKLAHQ 458

Query: 474 RLRELSEKDALTDLWNRRKFDQTISLECAKRRRYPDQAQSCLAIIDIDHFKRINDKFGHN 533
            +  L+  D LT+L NR  F +++     +R     + + CL ++DID+FKRIND  GH 
Sbjct: 459 HIERLAYTDNLTNLGNRPYFIRSLE----ERFAAGAEPRLCLLLVDIDNFKRINDSLGHQ 514

Query: 534 EGDLVLRTVAKGIQDQLRESDFIARIGGEEFAIIFPYTSIEE----AEQVLNRVRLHIAS 589
            GD +L ++A+ +++ L +   +AR    EFA++F    ++E    A+QVL RV      
Sbjct: 515 TGDKLLTSLARRLRNGLSQQSVLARFASNEFALLFDDMELDEGLRLADQVL-RVLDKPLF 573

Query: 590 LHHQQVTLSGGVTDVCT-----SPDQSYKRADLALYESKTSGRNQISVLT 634
           +  Q +++S  +   C+      P+   K A  AL+++K +G+NQ+ + T
Sbjct: 574 VDKQLISVSASLGLACSPQHGRDPETLMKHAGQALHKAKANGKNQVQIFT 623



 Score = 26.6 bits (57), Expect = 0.005
 Identities = 19/56 (33%), Positives = 22/56 (39%), Gaps = 3/56 (5%)

Query: 226 QFDSPDILNSAGELLLSEHKPSG---TRSTSSLHFSAQHPELWQKIQLNQQGFALS 278
           QF  PD+L S   +LL E    G      T SL   A      Q I L   G  L+
Sbjct: 732 QFSDPDLLGSIASILLEEQLSPGQLELELTESLLLDATEETRQQLIGLKALGLTLA 787