Pairwise Alignments

Query, 642 a.a., GGDEF domain-containing protein from Vibrio cholerae E7946 ATCC 55056

Subject, 642 a.a., PAS domain S-box/diguanylate cyclase (GGDEF) domain from Pseudomonas stutzeri RCH2

 Score =  172 bits (437), Expect = 3e-47
 Identities = 100/286 (34%), Positives = 158/286 (55%), Gaps = 15/286 (5%)

Query: 355 KLARAAMDG-MSAVVITDRQNRIIKVNNEFTRLSGYTFEDVKGKQPSIFASGLHKVEFYM 413
           K A A  D     V++TD + RI+ VN  F+R++GY+ E+V G+ P +FASG H  EFY 
Sbjct: 80  KQAAAVFDSTQEGVLVTDPRQRIVHVNPAFSRITGYSTEEVLGQTPKLFASGKHDAEFYQ 139

Query: 414 QMWKALQDNGVWEGEVINKRKDGESITEILRIQSIRDEDNVIQFYVASFVDISHRKALEN 473
           QMW AL+D G W GE+ N+RK+GE   +   ++ I D    +  YVA F D+S  K    
Sbjct: 140 QMWLALKDKGEWSGEIWNRRKNGEVYPQWQNLRCIHDNQGQLSHYVAVFSDLSALKRSRE 199

Query: 474 RLRELSEKDALTDLWNRRKFDQTISLECAKRRRYPDQAQSCLAIIDIDHFKRINDKFGHN 533
            L +L+  D L +L NR  F +    +  + R +  +    L +ID+DHFK IN+  GH+
Sbjct: 200 ELDQLAHYDPLVNLPNRLLFTERAKQDLERARAH--KRSGALLLIDLDHFKDINESLGHS 257

Query: 534 EGDLVLRTVAKGIQDQLRESDFIARIGGEEFAIIFPYTSIEEAEQVLNRVRLHIASLHH- 592
            GD +L+ V+  + + L +   + R+GG+EFA++      E+A  +  R+   +    H 
Sbjct: 258 LGDALLQAVSTRLSEHLEKGMTLGRLGGDEFALLCEGYGAEKATALALRILDRLNESFHI 317

Query: 593 --QQVTLSGGV--------TDVCTSPDQSYKRADLALYESKTSGRN 628
             Q++  S  +        TDV  + +Q  + AD AL+++K+SGR+
Sbjct: 318 GDQELFSSASIGIVLYPYPTDV-QNAEQLMRNADSALFKAKSSGRS 362