Pairwise Alignments

Query, 642 a.a., GGDEF domain-containing protein from Vibrio cholerae E7946 ATCC 55056

Subject, 886 a.a., PAS domain S-box/diguanylate cyclase (GGDEF) domain from Pseudomonas stutzeri RCH2

 Score =  192 bits (489), Expect = 4e-53
 Identities = 114/306 (37%), Positives = 174/306 (56%), Gaps = 30/306 (9%)

Query: 346 NHLKNSLDSKLARAAMDGMSAVVITDRQNRIIKVNNEFTRLSGYTFEDVKGKQPSIFASG 405
           + +   L+ ++A  A +    ++ITD QNRI++VN  F+R+SG++ E+  GK  ++ ASG
Sbjct: 314 DRVNTELERRIAAIAFESQQGMLITDGQNRILRVNRAFSRISGFSAEEAVGKTTALLASG 373

Query: 406 LHKVEFYMQMWKALQDNGVWEGEVINKRKDGESITEILRIQSIRDEDNVIQFYVASFVDI 465
            H  EFY  MW +++  GVWEGE+ N+RK GE   E L I ++R+    I  YVA+F DI
Sbjct: 374 KHGSEFYRAMWASIEATGVWEGEIWNRRKSGEIFPEWLTISAVRNLTGDISHYVAAFTDI 433

Query: 466 SHRKALENRLRELSEKDALTDLWNRR----KFDQTISLECAKRRRYPDQAQSCLAIIDID 521
           + RKA E R+  L+  D LT L NRR    +  Q ++  C   +         L  ID+D
Sbjct: 434 TDRKAAEERIHNLAFYDPLTGLPNRRLLLDRLQQAMAAGCRSGQ------LGALMFIDLD 487

Query: 522 HFKRINDKFGHNEGDLVLRTVAKGIQDQLRESDFIARIGGEEFAIIF------PYTSIEE 575
           +FK IND  GH  GD VLR  A+ +Q ++R SD +AR+GG+EF ++       P  +  +
Sbjct: 488 NFKNINDLHGHQTGDQVLRIAAERLQGEIRASDTVARLGGDEFVVMLENLGDAPELAATQ 547

Query: 576 AEQVLNRV--------RLHIASLHHQQ---VTLSGGVTDVCTSPDQSYKRADLALYESKT 624
           AE +  ++        RL+   L+      V L G  TD  +S D+  KRAD+++YE+K 
Sbjct: 548 AEHIGMKLLGSLGKPYRLNDLGLYSSASIGVVLFG--TD-GSSSDELMKRADMSMYEAKV 604

Query: 625 SGRNQI 630
           +G+N +
Sbjct: 605 AGKNAL 610