Pairwise Alignments

Query, 642 a.a., GGDEF domain-containing protein from Vibrio cholerae E7946 ATCC 55056

Subject, 418 a.a., diguanylate cyclase with PAS/PAC sensor from Pseudomonas syringae pv. syringae B728a

 Score =  158 bits (400), Expect = 4e-43
 Identities = 97/284 (34%), Positives = 154/284 (54%), Gaps = 15/284 (5%)

Query: 356 LARAAMDGMSAVVITDRQNRIIKVNNEFTRLSGYTFEDVKGKQPSIFASGLHKVEFYMQM 415
           LA+A    +  ++ITD  + I+  N  F +++GY+  ++ G+ P + +SG H   FY Q 
Sbjct: 138 LAQALNAALDPIIITDCNSTIVFANEAFQQITGYSSSEILGENPRMLSSGKHDEAFYAQF 197

Query: 416 WKALQDNGVWEGEVINKRKDGESITEILRIQSIRDEDNVIQFYVASFVDISHRKALENRL 475
            +AL+         INKRKDG        I  + + +  I  YV+   D++ R   E +L
Sbjct: 198 KEALKSGAPLRTTFINKRKDGSLFYAEHSISPLCNLEGAITHYVSISQDVTTRLGREQKL 257

Query: 476 RELSEKDALTDLWNRRKFDQTISLECAKRRRYPDQAQS----CLAIIDIDHFKRINDKFG 531
            E++  D LT L NRR  + T+       R+ P  + S     L I DIDHFK +ND++G
Sbjct: 258 LEIAHSDPLTGLDNRRSAEHTL------ERQIPAVSMSGKPFSLIICDIDHFKAVNDRYG 311

Query: 532 HNEGDLVLRTVAKGIQDQLRESDFIARIGGEEFAIIFPYTSIEEAEQVLNRVRLHIASL- 590
           H  GD V+ +VA  ++ ++R  D  AR GGEEF I+ P +S+++A ++  R+R  + SL 
Sbjct: 312 HPAGDSVITSVAAILKQRIRLLDVAARWGGEEFLILVPDSSLKQAAELAERIRNSVESLV 371

Query: 591 --HHQQVTLSGGVTDVCTSPDQS--YKRADLALYESKTSGRNQI 630
                 VT+S GV ++      +   +RAD ALY++K  GRN++
Sbjct: 372 IPETGSVTISLGVAELSAGETAASLIQRADKALYQAKRLGRNRV 415



 Score = 44.3 bits (103), Expect = 1e-08
 Identities = 33/121 (27%), Positives = 55/121 (45%), Gaps = 5/121 (4%)

Query: 365 SAVVITDRQNR-----IIKVNNEFTRLSGYTFEDVKGKQPSIFASGLHKVEFYMQMWKAL 419
           +AV+ITD         I+ VN  F  ++GYT E + G  P I        +   +M + L
Sbjct: 20  NAVLITDANLANGGPFIVYVNPAFCAMTGYTAEALIGASPRILQGPDTDPQVIERMRECL 79

Query: 420 QDNGVWEGEVINKRKDGESITEILRIQSIRDEDNVIQFYVASFVDISHRKALENRLRELS 479
            ++  +EG  +N R DG       +I  +RD+   +  +V+   +IS R   E     L+
Sbjct: 80  SESLFFEGSTVNYRADGSPYIVEWKISPVRDDAGTVCNFVSVQQNISPRIRAEREQHLLA 139

Query: 480 E 480
           +
Sbjct: 140 Q 140