Pairwise Alignments

Query, 642 a.a., GGDEF domain-containing protein from Vibrio cholerae E7946 ATCC 55056

Subject, 917 a.a., diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) from Synechococcus elongatus PCC 7942

 Score =  133 bits (335), Expect = 3e-35
 Identities = 83/286 (29%), Positives = 139/286 (48%), Gaps = 11/286 (3%)

Query: 356 LARAAMDGMSAVVITDRQNRIIKVNNEFTRLSGYTFEDVKGKQPSIFASGLHKVEFYMQM 415
           L  A  +  ++++IT  +  I  VN  F  ++GY  ++V GK P    SGL    FY  +
Sbjct: 362 LQEATENSPASILITSAEGIIEYVNPAFELMTGYGADEVIGKNPRFLKSGLMSPSFYQDL 421

Query: 416 WKALQDNGVWEGEVINKRKDGESITEILRIQSIRDEDNVIQFYVASFVDISHRKALENRL 475
           W+ +     W GE+ N+RK GE   +   I  ++D    I  +VA   DI+ +K     L
Sbjct: 422 WETITAGETWRGELYNRRKTGELFWDRTSISPVKDLAGQIIHFVAVKEDITEQKRNRELL 481

Query: 476 RELSEKDALTDLWNRRKFDQTISLECAKRRRYPDQAQSCLAIIDIDHFKRINDKFGHNEG 535
              +  D+LTDL NR      +    A   R  D     + ++D+D FK IND  GH+ G
Sbjct: 482 DHQANYDSLTDLPNRSLALDRLRQATALSERSNDTV--IVMLLDLDRFKNINDTLGHSYG 539

Query: 536 DLVLRTVAKGIQDQLRESDFIARIGGEEFAIIFPYTS----IEEAEQVLNRVRLHIASLH 591
           D +L+ +AK ++  L     I+R+GG+EF II P       +E+  Q L ++     ++ 
Sbjct: 540 DCLLQEIAKRLRYHLPREITISRLGGDEFLIICPAVKENIHLEKLSQQLLKIISQPITIE 599

Query: 592 HQQVTLSGGVTDVC-----TSPDQSYKRADLALYESKTSGRNQISV 632
            +++ ++  +   C      +P+   + AD A+Y +K +G N   +
Sbjct: 600 AEELVITASIGVACYPNDGVTPEVLMRNADTAMYSAKRNGGNDFQL 645