Pairwise Alignments

Query, 642 a.a., GGDEF domain-containing protein from Vibrio cholerae E7946 ATCC 55056

Subject, 1037 a.a., diguanylate cyclase (GGDEF domain) with PAS/PAC sensor from Synechococcus elongatus PCC 7942

 Score =  129 bits (324), Expect = 7e-34
 Identities = 100/301 (33%), Positives = 155/301 (51%), Gaps = 26/301 (8%)

Query: 352  LDSKLARAAMDGMSA-VVITDRQNRIIKVNNEFTRLSGYTFEDVKGKQPSIFASGLHKVE 410
            ++++  RAA+D +S+ + + D Q R I  N         + E++ GK    F S     E
Sbjct: 735  VEAQRLRAALDQVSSHIYMKDLQFRYIYANRSALDFVDRSLEEILGKDDFFFFS-----E 789

Query: 411  FYMQMWKALQDNGVWEGEVINKR------KDGESITEI---LRIQSIRDEDNVIQFYVAS 461
               ++ +A+ D+ V++GE   +       KDG+    +     I       N+I     S
Sbjct: 790  EAAKLLQAI-DSRVFQGEQTTEEIHLVNPKDGQLRVYLEIKTPIYESAQSSNIIGLLGIS 848

Query: 462  FVDISHRKALENRLRELSEKDALTDLWNRRKFDQTISLECAKRRRYPDQAQSCLAIIDID 521
              DI+ +K LE +L++ +  DALT + NRR+F      E  +  R        L IIDID
Sbjct: 849  -TDITEQKKLEQKLQQQATTDALTGILNRRQFITLAQAELNRIYRIQRDTSLSLVIIDID 907

Query: 522  HFKRINDKFGHNEGDLVLRTVAKGIQDQLRESDFIARIGGEEFAIIFPYTSIEEAEQVLN 581
            HFK IND +GH  GD VL       Q  +RE D  AR+GG+EF ++ P T+ ++A QV++
Sbjct: 908  HFKTINDSYGHTVGDQVLILWTNICQQNIREVDIFARLGGDEFVLMLPETNGKQAYQVMD 967

Query: 582  RVRLHI--ASLHHQQ----VTLSGGV---TDVCTSPDQSYKRADLALYESKTSGRNQISV 632
            R+R  +   SLH  Q    +T+S G+   T    + DQ  +RAD ALY++K  GR++I +
Sbjct: 968  RIRQLVIQQSLHLPQQAIAITISVGIAVWTPEILTLDQFLERADRALYQAKQQGRDRIIL 1027

Query: 633  L 633
            L
Sbjct: 1028 L 1028



 Score = 28.5 bits (62), Expect = 0.002
 Identities = 14/31 (45%), Positives = 18/31 (58%)

Query: 447 SIRDEDNVIQFYVASFVDISHRKALENRLRE 477
           ++RDE N     V S +DI+ RK  E  LRE
Sbjct: 444 AVRDEQNKPYRMVGSTIDITRRKQAEEALRE 474