Pairwise Alignments

Query, 642 a.a., GGDEF domain-containing protein from Vibrio cholerae E7946 ATCC 55056

Subject, 1061 a.a., Putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) (NCBI) from Rhodospirillum rubrum S1H

 Score =  136 bits (342), Expect = 6e-36
 Identities = 94/290 (32%), Positives = 146/290 (50%), Gaps = 21/290 (7%)

Query: 355 KLARAAMDGMSAVVITDRQNRIIKVNNEFTRLSGYTFEDVKGKQPSIFASGLHKVEFYMQ 414
           KL+RA     ++V+ITD +  I  VN +F + +GY   +V G  P I  SG      Y +
Sbjct: 508 KLSRAVEQSPASVIITDARGTIEYVNPQFEKSTGYRSWEVIGANPRILKSGHIAEATYAE 567

Query: 415 MWKALQDNGVWEGEVINKRKDGESITEILRIQSIRDEDNVIQFYVASFVDISHRKALENR 474
           MWK L +   W GE+ N+RKDG    E   +  ++D        +A   DI+ RK  ENR
Sbjct: 568 MWKTLNEGREWRGELHNRRKDGTLYWEYASLSPVKDRRGRTTHLLAVKEDITARKETENR 627

Query: 475 LRELSEKDALTDLWNRRKFDQTISLECAKRRRYPDQAQSCLAI-----IDIDHFKRINDK 529
           L   +  D LTDL NR       SL  ++ +    +A++  +I     ID+DHFK +ND 
Sbjct: 628 LIRQANFDELTDLPNR-------SLCYSRLKEAIVEAEATASIVGVLFIDLDHFKNVNDS 680

Query: 530 FGHNEGDLVLRTVAKGIQDQLRESDFIARIGGEEFAIIFPYTSIEEA-EQVLNRVRLHIA 588
            GH  GD +L  VA+ +++  R  D ++R GG+EF ++ P  +  EA   V   +   +A
Sbjct: 681 LGHAVGDKLLTAVAQRLREVARPGDTLSRQGGDEFLMLLPDLNGSEAGHGVAQAILTALA 740

Query: 589 ---SLHHQQVTLSGGVTDVCTSPD-----QSYKRADLALYESKTSGRNQI 630
              S+  +++ ++  +       D     +  + AD A+Y +K SGRN I
Sbjct: 741 PPFSIDGREIYMAASIGITFFPRDGRSAAELLRNADSAMYTAKESGRNAI 790



 Score = 26.6 bits (57), Expect = 0.006
 Identities = 13/21 (61%), Positives = 16/21 (76%)

Query: 459 VASFVDISHRKALENRLRELS 479
           V +FVDI+ RKA E  LR+LS
Sbjct: 490 VITFVDITERKASEAALRKLS 510