Pairwise Alignments

Query, 642 a.a., GGDEF domain-containing protein from Vibrio cholerae E7946 ATCC 55056

Subject, 837 a.a., diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) (RefSeq) from Shewanella loihica PV-4

 Score =  157 bits (398), Expect = 1e-42
 Identities = 95/283 (33%), Positives = 152/283 (53%), Gaps = 12/283 (4%)

Query: 362 DGMSAVVITDRQNRIIKVNNEFTRLSGYTFEDVKGKQPSIFASGLHKVEFYMQMWKALQD 421
           + +  VVITD    II+V+  FT ++GY+ ++V G+ P I  SG H   F+ ++W++L  
Sbjct: 296 NSVEGVVITDASGNIIEVHGAFTEITGYSRDEVLGENPRILNSGRHDKAFFERLWRSLLT 355

Query: 422 NGVWEGEVINKRKDGESITEILRIQSIRDEDNVIQFYVASFVDISHRKALENRLRELSEK 481
           NG W GE+ N+RK G    E L I S+  +D+ ++++VA F DIS +K  E  L  L   
Sbjct: 356 NGKWHGEIWNRRKSGAIYPEQLTISSMYGDDHQVRYFVAVFADISAQKQSEKELARLVYH 415

Query: 482 DALTDLWNRRKFDQTISLECAKRRRYPDQAQSCLAIIDIDHFKRINDKFGHNEGDLVLRT 541
           D LT L NR     + +LE   R    ++ +  L  ID+D FK IND +GH  GD +L  
Sbjct: 416 DPLTKLPNRMML--SANLEQELRHAAREETELALIFIDVDLFKHINDSYGHVTGDAILVE 473

Query: 542 VAKGIQDQLRESDFIARIGGEEFAIIFPYTSIEEAEQVL-NRVR------LHIASLHHQQ 594
           VA+ +  +L E   +AR+G +EF  + P+   +++  ++ +R+R        +      +
Sbjct: 474 VARRLGQKLGEEATLARLGSDEFIAVLPHVESDDSVSLMVSRLREAFDAPFLLDDEGSVR 533

Query: 595 VTLSGGVT---DVCTSPDQSYKRADLALYESKTSGRNQISVLT 634
           +T S GV        S D   + AD A++ +K +GRN  +  T
Sbjct: 534 LTASMGVAIYPGDGESGDTLLRNADTAMHRAKANGRNNYAFYT 576