Pairwise Alignments

Query, 642 a.a., GGDEF domain-containing protein from Vibrio cholerae E7946 ATCC 55056

Subject, 759 a.a., diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) from Marinobacter adhaerens HP15

 Score =  132 bits (331), Expect = 7e-35
 Identities = 89/274 (32%), Positives = 139/274 (50%), Gaps = 18/274 (6%)

Query: 366 AVVITDRQNRIIKVNNEFTRLSGYTFEDVKGKQPSIFASGLHKVEFYMQMWKALQDNGVW 425
           A+ ITD    +I  N+ +  ++G       G+ P +       VE    ++ + +  G W
Sbjct: 485 AIFITDNHGIVIDANDAYLAITGRPRNRAIGRLPPL------PVEEGSGIFASARSQGFW 538

Query: 426 EGEVINKRKDGESITEILRIQSIRDEDNVIQFYVASFVDISHRKALENRLRELSEKDALT 485
            GE  ++R DGE IT  + + S+R +   +  +V  F DIS  K  E +LR ++  DALT
Sbjct: 539 SGEFASRRNDGEPITLSVTLSSVRGDHGEVSHFVGIFSDISRLKEQERKLRIMAHYDALT 598

Query: 486 DLWNRRKFDQTISLECAKRRRYPDQAQSCLAIIDIDHFKRINDKFGHNEGDLVLRTVAKG 545
            + NR  F   +    A  RR     +  +  ID+D FK +ND FGH  GD +L  +A  
Sbjct: 599 GMPNRVLFADRLQQAMALTRR--QSGKLAVVYIDLDEFKPVNDAFGHEAGDQLLVEIAHR 656

Query: 546 IQDQLRESDFIARIGGEEFAIIFPYTSIEEA-EQVLNRVRLHIA-----SLHHQQVTLSG 599
           ++ +LRE D +ARIGG+EFA I      + A E +L R+   +A     + H  +V+ S 
Sbjct: 657 MRSELREEDTLARIGGDEFAAIVMNVQDDPALESLLMRLLARVAEPVWVADHSVEVSASI 716

Query: 600 GVTDVCTSP----DQSYKRADLALYESKTSGRNQ 629
           G T    +     DQ  ++AD A+Y++K  GRN+
Sbjct: 717 GYTLFPQAEDLDGDQLLRQADQAMYQAKHRGRNR 750



 Score = 30.4 bits (67), Expect = 3e-04
 Identities = 35/155 (22%), Positives = 58/155 (37%), Gaps = 6/155 (3%)

Query: 328 TVLSLLSIIAAGFAAWNINHLKNSLDSKLARAAMDGMSAVVITDRQNRIIKVNNEFTRLS 387
           T+L LL ++ A       +  + + + +  R  + G     +  R    I  N     L 
Sbjct: 319 TILVLLMLLVASSLWLGKSKRQLAAEQRRLRQLIRGWPQAALLIRGGLFIDTNRASVDLL 378

Query: 388 GYTF-EDVKGKQPSIFA-----SGLHKVEFYMQMWKALQDNGVWEGEVINKRKDGESITE 441
            YT  E + GK  ++F+      G    +    M   +    V + E +  R DG  I  
Sbjct: 379 RYTSSESLVGKDLAVFSPEFQPDGQISRQKMAPMLARVSAGQVEQCEWVLNRSDGTEIWV 438

Query: 442 ILRIQSIRDEDNVIQFYVASFVDISHRKALENRLR 476
            L +  +  ED      + S  +I+ RK  E R R
Sbjct: 439 ELTMAPVHTEDEPEALILCSLYEITLRKHAEQRQR 473