Pairwise Alignments

Query, 642 a.a., GGDEF domain-containing protein from Vibrio cholerae E7946 ATCC 55056

Subject, 879 a.a., sensory box protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  167 bits (423), Expect = 2e-45
 Identities = 101/278 (36%), Positives = 154/278 (55%), Gaps = 12/278 (4%)

Query: 367 VVITDRQNRIIKVNNEFTRLSGYTFEDVKGKQPSIFASGLHKVEFYMQMWKALQDNGVWE 426
           VV+TDR   I  VN  F  ++GY+ E++ G+ P +F SG H+  F+  MW  L   G W 
Sbjct: 340 VVVTDRHGNITDVNGAFYEITGYSREELLGQNPRLFNSGRHEKAFFETMWNNLLGGGKWN 399

Query: 427 GEVINKRKDGESITEILRIQSIRDEDNVIQFYVASFVDISHRKALENRLRELSEKDALTD 486
           GE+ N+RKDG    + + I +I DE   I+++VA F DIS +K  E +L  L+  D LT 
Sbjct: 400 GEIWNRRKDGTIFPQNITISAIYDEVGEIRYFVAVFADISAQKQSEAQLAHLAYFDPLTH 459

Query: 487 LWNRRKFDQTISLECAKRRRYPDQAQSCLAIIDIDHFKRINDKFGHNEGDLVLRTVAKGI 546
           L NR K    +  E    +R    +Q     ID+D FK IND FGH+ GD +L  +AK +
Sbjct: 460 LPNRMKLMIQLKQEIMHAKRL--NSQLATVFIDVDLFKHINDSFGHSIGDEMLVELAKRL 517

Query: 547 QDQLRESDFIARIGGEEF-AIIFPYTSIEEAEQVLNRVR------LHIASLHHQQVTLSG 599
           + QL+E D ++RIG +EF A+I      E+A   +N++R        +++  H ++T + 
Sbjct: 518 RSQLQEQDVLSRIGSDEFVALISGIQYHEDATAAINQLRQVFEQPFVVSTGDHLRLTATM 577

Query: 600 GVT---DVCTSPDQSYKRADLALYESKTSGRNQISVLT 634
           GV+      ++ D   + AD A+Y +K+ GRN  +  T
Sbjct: 578 GVSLYPSDGSNADTLLRNADAAMYRAKSEGRNNYAFYT 615