Pairwise Alignments

Query, 642 a.a., GGDEF domain-containing protein from Vibrio cholerae E7946 ATCC 55056

Subject, 998 a.a., sensory box protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  140 bits (353), Expect = 3e-37
 Identities = 92/290 (31%), Positives = 153/290 (52%), Gaps = 12/290 (4%)

Query: 355 KLARAAMDGMS-AVVITDRQNRIIKVNNEFTRLSGYTFEDVKGKQPSIFASGLHKVEFYM 413
           KL+    D  S A+ + D    II VN  FT ++GY+  +++G+   +    L+  EFY 
Sbjct: 447 KLSALVYDNSSEAMSVLDENGVIITVNAAFTDITGYSESEIRGQHIRMMYCDLNGHEFYQ 506

Query: 414 QMWKALQDNGVWEGEVINKRKDGESITEILRIQSIRDEDNVIQFYVASFVDISHRKALEN 473
           QM   +++ G W+GE+  +R++ E     L I +I+D+D +    VA F DI+ +K  E+
Sbjct: 507 QMNDDIRNKGEWQGEMRQRRRNNEEYVIWLTINTIKDKDGLPHRRVALFSDITDKKQSEH 566

Query: 474 RLRELSEKDALTDLWNRRKFDQTISLECAKRRRYPDQAQSCLAIIDIDHFKRINDKFGHN 533
            + + +  D LT L NRR   + +S E     R  ++    L  +D+D+FK +ND  GH 
Sbjct: 567 LIWKQANYDTLTGLPNRRMLLEYLSAEIKTADR--NRNHFALMFLDLDYFKEVNDTLGHA 624

Query: 534 EGDLVLRTVAKGIQDQLRESDFIARIGGEEFAIIF----PYTSIEE-AEQVLNRV-RLHI 587
            GDL+L   A  ++  +R++D +AR+GG+EF ++      +  IE  AE +L R+   + 
Sbjct: 625 MGDLLLIETASRLKSCVRDADVVARLGGDEFTVVLSSMADHKGIERVAEHILRRIAEPYY 684

Query: 588 ASLHHQQVTLSGGVT---DVCTSPDQSYKRADLALYESKTSGRNQISVLT 634
                  ++ S G+T   D   S +   K AD A+Y +K  GRN+ +  T
Sbjct: 685 LGEETTHISASIGITLYPDDSPSIEGLLKHADQAMYAAKDQGRNRFNYFT 734