Pairwise Alignments

Query, 642 a.a., GGDEF domain-containing protein from Vibrio cholerae E7946 ATCC 55056

Subject, 1077 a.a., sensory box protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  173 bits (439), Expect = 3e-47
 Identities = 103/296 (34%), Positives = 165/296 (55%), Gaps = 13/296 (4%)

Query: 350 NSLDSKLARAAMDGMSAVVITDRQNRIIKVNNEFTRLSGYTFEDVKGKQPSIFASGLHKV 409
           N   S+ A         +++TD  N I  VN  F++++GY+ EDVKG+ PS+ +S  H  
Sbjct: 504 NQALSRAAAVFNYSAEGIMVTDADNHIELVNPAFSQITGYSLEDVKGRSPSMLSSKRHPS 563

Query: 410 EFYMQMWKALQDNGVWEGEVINKRKDGESITEILRIQSIRDEDNVIQFYVASFVDISHRK 469
            FY  MW+ALQ +  WEGE+ NKRKDG+   E L I  +R+E   I  ++  F+DIS RK
Sbjct: 564 HFYTAMWEALQKDSKWEGEIWNKRKDGQVYPEYLAITVVRNERGEIIQHIGLFMDISKRK 623

Query: 470 ALENRLRELSEKDALTDLWNRRKFDQTISLECAKRRRYPDQAQSCLAIIDIDHFKRINDK 529
             E  L   +  D LT L NR+ F++ +  E    +   D  +  + +ID+D FK IND 
Sbjct: 624 QYEQDLWYQAHFDTLTGLPNRKLFNERLQHEIQLAQH--DSRKLAILLIDLDQFKYINDV 681

Query: 530 FGHNEGDLVLRTVAKGIQDQLRESDFIARIGGEEFAIIFPYTSIEEA-EQVLNRVRLHIA 588
            GH  GDL+L+ VAK +++   ++D IARIGG+EF +I P  + E A E + +R+   ++
Sbjct: 682 QGHATGDLLLQDVAKRLENIAGKNDLIARIGGDEFVLILPRVTNEFAIEHMASRIIETLS 741

Query: 589 ---SLHHQQVTLSGGVTDVCTSPDQSY------KRADLALYESKTSGRNQISVLTA 635
              +L+ +++ +S     +   P+         +  ++A+Y++K +GRN     T+
Sbjct: 742 TPFNLNEREIQISASF-GIGVYPEDGLDVSSLTRNTEMAMYQAKDAGRNNFKYFTS 796