Pairwise Alignments

Query, 642 a.a., GGDEF domain-containing protein from Vibrio cholerae E7946 ATCC 55056

Subject, 706 a.a., diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) (RefSeq) from Shewanella sp. ANA-3

 Score =  121 bits (304), Expect = 9e-32
 Identities = 98/323 (30%), Positives = 146/323 (45%), Gaps = 34/323 (10%)

Query: 322 LMSQAVTVLSLLSI---------IAAGFAAWNINHLKNSLDSKLARAAMDGMSAVVITDR 372
           L  QAV ++ L ++         I+ GFA     H+   +   +A    +   AV ITD 
Sbjct: 121 LQQQAVVLVELQALNRRTQVRPSISDGFA-----HIPREI---MATTLEESAEAVYITDA 172

Query: 373 QNRIIKVNNEFTRLSGYTFEDVKGKQPSIFASGLHKVEFYMQMWKALQDNGVWEGEVINK 432
            NRI+ VN    R+ GY+ E + GK P    + +           A++  G W GE + +
Sbjct: 173 DNRILAVNKAMCRICGYSAEQLIGKTPEFLEAKILPSGQETDCQAAMKLRGFWHGETLKQ 232

Query: 433 RKDGESITEILRIQSIRDEDNVIQFYVASFVDISHRKALENRLRELSEKDALTDLWNRRK 492
           R DG         + I  +DN + ++V  F DIS +K LE +L   +  D LT L NR  
Sbjct: 233 RSDGSHFPAWQSSRRIETDDNAL-YHVNIFSDISTKKLLETQLTTRAMYDTLTGLPNRYH 291

Query: 493 FDQTISLECAKRRRYPDQAQSCLAIIDIDHFKRINDKFGHNEGDLVLRTVAKGIQDQLRE 552
             Q ++    K +  P  A   L  +D++ FK IND FGH+ GD VL+ VA  ++    E
Sbjct: 292 LKQILNSALDKLKDDPS-ALGALMFLDLNGFKNINDSFGHSMGDRVLQLVAARLEAGCIE 350

Query: 553 SDFIARIGGEEFAIIFPYTSIEEAEQVLNRVRLHIASLHHQQVTLSG---------GVTD 603
              IAR+GG+EF ++    S +E  Q+       I SL      + G         G+  
Sbjct: 351 KADIARMGGDEFTLVLQECSCKEEIQLFAE---QILSLFDSPFEIEGQKFFLGTSIGIAL 407

Query: 604 VCTSPDQS---YKRADLALYESK 623
             T  DQ+      AD A+Y +K
Sbjct: 408 FPTHSDQAGQLISLADTAMYSAK 430