Pairwise Alignments

Query, 642 a.a., GGDEF domain-containing protein from Vibrio cholerae E7946 ATCC 55056

Subject, 878 a.a., diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) (RefSeq) from Shewanella sp. ANA-3

 Score =  178 bits (451), Expect = 1e-48
 Identities = 106/281 (37%), Positives = 159/281 (56%), Gaps = 12/281 (4%)

Query: 364 MSAVVITDRQNRIIKVNNEFTRLSGYTFEDVKGKQPSIFASGLHKVEFYMQMWKALQDNG 423
           +  VVITDR   I  VN  F  ++GY+ E++ G+ P +F SG H+  F+  MW  L + G
Sbjct: 337 LEGVVITDRHGNITDVNGAFYEITGYSREELLGQNPRLFNSGRHEKAFFDAMWNHLLETG 396

Query: 424 VWEGEVINKRKDGESITEILRIQSIRDEDNVIQFYVASFVDISHRKALENRLRELSEKDA 483
            W GE+ N+RKDG    + + I +I DE   ++++VA F DIS +K  E +L  L+  D 
Sbjct: 397 KWNGEIWNRRKDGTIFPQNITISTIYDELGDVRYFVAVFSDISAQKQSEAQLAHLAYFDP 456

Query: 484 LTDLWNRRKFDQTISLECAKRRRYPDQAQSCLAIIDIDHFKRINDKFGHNEGDLVLRTVA 543
           LT L NR K    +  E    +R    AQ     ID+D FK IND FGH+ GD +L  +A
Sbjct: 457 LTHLPNRMKLMMQLKQELRHAKRL--NAQLATVFIDVDLFKHINDSFGHSIGDEMLVELA 514

Query: 544 KGIQDQLRESDFIARIGGEEF-AIIFPYTSIEEAEQVLNRVR------LHIASLHHQQVT 596
           K ++ QL+E D ++RIGG+EF A+I    S E+A   +N++R        +++  H ++T
Sbjct: 515 KRLRSQLQEQDVLSRIGGDEFVALISGIQSHEDAAAAINQLRQVFEQPFVVSTGDHLRLT 574

Query: 597 LSGGVT---DVCTSPDQSYKRADLALYESKTSGRNQISVLT 634
            S GV+   D  ++ D   + AD A+Y +K+ GRN  +  T
Sbjct: 575 ASMGVSIYPDDGSNADTLLRNADAAMYRAKSEGRNNFAFYT 615