Pairwise Alignments

Query, 612 a.a., protein translocase subunit SecD from Vibrio cholerae E7946 ATCC 55056

Subject, 622 a.a., Protein-export membrane protein SecD (TC 3.A.5.1.1) from Pseudomonas fluorescens FW300-N2E2

 Score =  404 bits (1038), Expect = e-117
 Identities = 237/623 (38%), Positives = 363/623 (58%), Gaps = 31/623 (4%)

Query: 13  LINHYSAWKYVVLVTTIIILTLSAIPTWYGEQPSIQLQSKDATSVLR----NVPELTQLL 68
           ++N Y  WKYV+++  + +  + + P  Y + P+IQ+    A++ L+    ++   +  L
Sbjct: 1   MLNKYPLWKYVLILAVLAVGLIYSAPNLYPDDPAIQVSG--ASTALQVTQADLDRASAAL 58

Query: 69  NKQNIQ--ADEITQQGDNTTLVFANETQQSQARNALDALVKEGDTITYSYVSVAPKWLGN 126
              +I+  A  I + G    L       Q  A++ +   + +   +  +     P+WL  
Sbjct: 59  KASDIEVKAASIAENGKGGLLRLVKSEDQLPAKDVVRKALGDDYVVALNLAQTTPQWLRK 118

Query: 127 LGFSPIKLGLDLRGGVQFLLNVDVDKAFQEQRDSMMDAVKDSLRAERLRGVVVQAMGNDA 186
           LG  P+KLGLDL GGV FLL VD++KA   +       VK  LR ER+R   +  + + A
Sbjct: 119 LGAHPMKLGLDLSGGVHFLLEVDMEKALDARMKVYEGDVKSLLRKERVRYRSLPQL-DGA 177

Query: 187 FEVKTEQPQALSHVRKYLQENYRGWEI----RQGSDQLQVQPSQQNKSEFQTATIQQNLK 242
            ++           R  +++N+  ++I      G   L++  +    +E +  +I+QNL 
Sbjct: 178 IQLGFSDEDTREQARALIRKNFNDFDIVPADLNGQAVLRLAMTPAKLAEIREYSIKQNLT 237

Query: 243 IMRDRIEELGITEALVQRQGEHAIRIELPGVQDPSQAKNVIGATASLAFYEAKSPTDARS 302
            +R+R+ ELG+ E +VQRQG + I +ELPGVQD ++AK ++G TA+L F  A  P  +++
Sbjct: 238 TVRNRVNELGVAEPIVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLAAEPGASKA 297

Query: 303 YDDLILEDGNGRPVILAKRP-VLSGEHIVNARAGVDNMGMSEVNISLDHAGGKIMSDFSG 361
             +       GRP    +R  +++G+ + +A+AG D  G  +VNI LD  GG++MS  + 
Sbjct: 298 TSESFEFREGGRPAAQIERGLIITGDQVTDAQAGFDEQGRPQVNIRLDGHGGELMSRATR 357

Query: 362 KHIGKPMATVYREYKTNARG--------------ETVRSEK-VISVATIQSQLGSQFRIT 406
            ++G+ MA ++ E K                   +T + EK +IS+ATIQS LGSQFRIT
Sbjct: 358 SNVGRSMAVIFIEQKPTTTYTKQVVNGVEKDVPVQTFKEEKKIISLATIQSPLGSQFRIT 417

Query: 407 GAGSMEEAQQLALLLRAGSLTAPVTIVEERTIGASLGEENIANGFAALALGMAMTLTFMA 466
           G     E+ +LALLLRAG L AP+   EERTIG SLG +NI  G  A   GM     F+ 
Sbjct: 418 GLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGIDASLWGMLFVSLFII 477

Query: 467 LWYRRLGWVANVALLVNMACLLGLIALLPGAVLTLPGIAGLVLTVGMAVDTNVLIFERIR 526
             YR  G +A VAL VNM  LL L++LL GA LTLPGIAG+VLT+GMAVD NVLIF RIR
Sbjct: 478 AIYRFFGIIATVALAVNMVMLLALMSLL-GATLTLPGIAGIVLTMGMAVDANVLIFSRIR 536

Query: 527 DKLSEGRNFAQAIDTGFDSAFSTILDANITTMITAVILYSIGNGPIQGFALTLGLGLLTS 586
           ++++ G    +AI+ GF  AF+ ILDAN+TT++   IL+++G GP++GFA+T+ LG+ TS
Sbjct: 537 EEIAAGMTIQRAINEGFGRAFTAILDANLTTLLVGGILFAMGTGPVKGFAVTMSLGIFTS 596

Query: 587 MFSGVFASRALINLVW-GRDTRR 608
           MF+ +  +RA++NL++ GRD ++
Sbjct: 597 MFTAIMVTRAMVNLIFGGRDFKK 619