Pairwise Alignments

Query, 612 a.a., protein translocase subunit SecD from Vibrio cholerae E7946 ATCC 55056

Subject, 622 a.a., Protein-export membrane protein SecD (TC 3.A.5.1.1) from Pseudomonas fluorescens FW300-N1B4

 Score =  405 bits (1040), Expect = e-117
 Identities = 235/623 (37%), Positives = 366/623 (58%), Gaps = 31/623 (4%)

Query: 13  LINHYSAWKYVVLVTTIIILTLSAIPTWYGEQPSIQLQSKDATSVLR----NVPELTQLL 68
           ++N Y  WKY++++  + I  + + P  Y + P+IQ+    A++ L+    ++  ++  L
Sbjct: 1   MLNKYPLWKYILILAVLAIGLIYSAPNLYPDDPAIQVSG--ASTALQVTQADLDRVSTAL 58

Query: 69  NKQ--NIQADEITQQGDNTTLVFANETQQSQARNALDALVKEGDTITYSYVSVAPKWLGN 126
                N++A  +   G    +       Q  A++ +   + +   +  +     P+WL +
Sbjct: 59  KDSGINVKAATLAAGGKGGLIRLTKAEDQLPAKDVVRKALGDDYVVALNLAQTTPQWLRS 118

Query: 127 LGFSPIKLGLDLRGGVQFLLNVDVDKAFQEQRDSMMDAVKDSLRAERLRGVVVQAMGNDA 186
           LG  P+KLGLDL GGV FLL VD+DKA   +       VK  LR ERLR   +  +G  A
Sbjct: 119 LGAHPMKLGLDLSGGVHFLLEVDMDKALDARLKVYEGDVKSLLRKERLRYRSLPQLGG-A 177

Query: 187 FEVKTEQPQALSHVRKYLQENYRGWEI----RQGSDQLQVQPSQQNKSEFQTATIQQNLK 242
            ++      A    R  +++N+  ++I      G   L++  +    +E +  +I+QNL 
Sbjct: 178 IQLGFTDEAAREEARALIRKNFNDFDIVPADLNGQPVLRLAMTPAKLAEIREYSIKQNLT 237

Query: 243 IMRDRIEELGITEALVQRQGEHAIRIELPGVQDPSQAKNVIGATASLAFYEAKSPTDARS 302
            +R+R+ ELG+ E +VQRQG + I +ELPGVQD ++AK ++G TA+L F  A  P  +++
Sbjct: 238 TVRNRVNELGVAEPIVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLAAEPGASKA 297

Query: 303 YDDLI-LEDGNGRPVILAKRPVLSGEHIVNARAGVDNMGMSEVNISLDHAGGKIMSDFSG 361
             +     +GN    ++ +  +++G+ + +A+AG    G  EVNI LD  GG++MS  + 
Sbjct: 298 TSESFEFREGNRPAALIERGLIITGDQVTDAKAGFGEQGTPEVNIRLDGHGGELMSRATR 357

Query: 362 KHIGKPMATVYREYKT--------------NARGETVRSEK-VISVATIQSQLGSQFRIT 406
            ++G+ MA ++ E +               +   +T + EK +IS+ATIQS LG+QFRIT
Sbjct: 358 NNVGRSMAVIFIEQRPVTTYVKQVVNGVEKDVPVQTFKEEKKIISLATIQSPLGAQFRIT 417

Query: 407 GAGSMEEAQQLALLLRAGSLTAPVTIVEERTIGASLGEENIANGFAALALGMAMTLTFMA 466
           G     E+ +LALLLRAG L AP+   EERTIG SLG +NI  G  A   GM     F+ 
Sbjct: 418 GLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGIDASLWGMLFVSLFIM 477

Query: 467 LWYRRLGWVANVALLVNMACLLGLIALLPGAVLTLPGIAGLVLTVGMAVDTNVLIFERIR 526
             YR  G +A VAL VNM  LL L++LL GA LTLPGIAG+VLT+GMAVD NVLIF RIR
Sbjct: 478 AIYRFFGLIATVALTVNMVMLLALMSLL-GATLTLPGIAGIVLTMGMAVDANVLIFSRIR 536

Query: 527 DKLSEGRNFAQAIDTGFDSAFSTILDANITTMITAVILYSIGNGPIQGFALTLGLGLLTS 586
           ++++ G    +AI+ GF  AF+ ILDAN+TT++   IL+++G GP++GFA+T+ LG+ TS
Sbjct: 537 EEIAAGMTVQRAINEGFGRAFTAILDANLTTLLVGGILFAMGTGPVKGFAVTMSLGIFTS 596

Query: 587 MFSGVFASRALINLVW-GRDTRR 608
           MF+ +  +RA++NL++ GRD ++
Sbjct: 597 MFTAIMVTRAMVNLIFGGRDFKK 619