Pairwise Alignments

Query, 612 a.a., protein translocase subunit SecD from Vibrio cholerae E7946 ATCC 55056

Subject, 622 a.a., protein-export membrane protein, SecD/SecF family from Pseudomonas stutzeri RCH2

 Score =  402 bits (1034), Expect = e-116
 Identities = 232/621 (37%), Positives = 366/621 (58%), Gaps = 27/621 (4%)

Query: 13  LINHYSAWKYVVLVTTIIILTLSAIPTWYGEQPSIQLQSKDATSVL--RNVPELTQLLNK 70
           ++N +  WKY++++  + I  + + P  Y + P+IQ+        +   ++  +++ L  
Sbjct: 1   MLNRFPLWKYLLILAVLAIAFVYSAPNLYPDDPAIQVTGASTAQEIGTEDLERISKALVD 60

Query: 71  QNI--QADEITQQGDNTTLVFANETQQSQARNALDALVKEGDTITYSYVSVAPKWLGNLG 128
             I  ++  + +QG    +    +  Q  A++ +   + +   +  +     P WL +LG
Sbjct: 61  GGIAVKSASLDEQGRGGLVRLERQDDQLPAKDIVRRTLGDAYVVALNLAPTTPDWLRSLG 120

Query: 129 FSPIKLGLDLRGGVQFLLNVDVDKAFQEQRDSMMDAVKDSLRAERLRGVVVQAMGNDAFE 188
            SP+KLGLDL GGV FLL VD++KA + + +     VK  LR ER+R   +  +  DA +
Sbjct: 121 ASPMKLGLDLSGGVHFLLEVDMEKAIETRLNVSEGEVKSLLRKERVRYRSLPNL-KDAVQ 179

Query: 189 VKTEQPQALSHVRKYLQENYRGWEI----RQGSDQLQVQPSQQNKSEFQTATIQQNLKIM 244
           +       L + +  +++N+  +E+    R G   L++  ++   +E +  +I+QNL  +
Sbjct: 180 LGFADEATLGNAQSLIRKNFTDFELTSSERNGQFVLRLTLTEAKLAEIREYSIKQNLTTV 239

Query: 245 RDRIEELGITEALVQRQGEHAIRIELPGVQDPSQAKNVIGATASLAFYEAKSPTDARSYD 304
           R+R+ ELG+ E LVQRQG + I +ELPGVQD ++AK ++G TA+L F  A     +R+  
Sbjct: 240 RNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLAADADASRAST 299

Query: 305 DLILEDGNGRPVILAKRP-VLSGEHIVNARAGVDNMGMSEVNISLDHAGGKIMSDFSGKH 363
           +       GRP +  +R  +++G+ + +A+A  D  G  +VNI LD  GG +M+  +  +
Sbjct: 300 EAFEFRQEGRPPVQLERTLIITGDQVTDAQASYDENGRPQVNIRLDGHGGDLMNRATRNN 359

Query: 364 IGKPMATVYREYKT--------------NARGETVRSEK-VISVATIQSQLGSQFRITGA 408
           +G+ MA ++ E +                 R ET + EK +IS+ATIQS LGSQFRITG 
Sbjct: 360 VGRSMAVIFIEQRPMTRYVRQMVDGVEQEVRVETFQEEKKIISLATIQSPLGSQFRITGL 419

Query: 409 GSMEEAQQLALLLRAGSLTAPVTIVEERTIGASLGEENIANGFAALALGMAMTLTFMALW 468
               E+ +LALLLRAG L AP+   EERTIG SLG ENI  G  A   G      FM L 
Sbjct: 420 DGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGAENIKLGVQAAMWGFLFVAIFMVLI 479

Query: 469 YRRLGWVANVALLVNMACLLGLIALLPGAVLTLPGIAGLVLTVGMAVDTNVLIFERIRDK 528
           Y+  G +A +ALL NM  L  ++++L  A LTLPGIAG+VLT+GMAVD NVLIF RIR++
Sbjct: 480 YKFFGVLATIALLFNMVVLTAMMSML-NATLTLPGIAGIVLTMGMAVDANVLIFSRIREE 538

Query: 529 LSEGRNFAQAIDTGFDSAFSTILDANITTMITAVILYSIGNGPIQGFALTLGLGLLTSMF 588
           ++ G +  +AI  GFD AFS I+D N+TT++   IL+++G GPI+GFA+TL +G+LTSMF
Sbjct: 539 IANGMSIQRAIHEGFDRAFSAIVDGNLTTLLVGGILFAMGTGPIKGFAVTLSIGILTSMF 598

Query: 589 SGVFASRALINLVW-GRDTRR 608
           + +  +R ++NL++ GRD ++
Sbjct: 599 TAIIVTRGMVNLIYGGRDLKK 619