Pairwise Alignments

Query, 612 a.a., protein translocase subunit SecD from Vibrio cholerae E7946 ATCC 55056

Subject, 622 a.a., SecD/SecF/SecDF export membrane protein:SecD export membrane protein from Pseudomonas syringae pv. syringae B728a

 Score =  412 bits (1058), Expect = e-119
 Identities = 241/625 (38%), Positives = 370/625 (59%), Gaps = 35/625 (5%)

Query: 13  LINHYSAWKYVVLVTTIIILTLSAIPTWYGEQPSIQLQSKDATSVLRNVPELTQLLNKQ- 71
           ++N Y  WKYV+++  +++  + + P  Y +  +IQ+ S  +T++  N  ++ +      
Sbjct: 1   MLNKYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQI-SGASTALQVNQADVDRAAKALA 59

Query: 72  ----NIQADEITQQGDNTTLVFANETQQSQARNALDALVKEGDTITYSYVSVAPKWLGNL 127
               +++A  + + G    L  + +  Q  A++ +   + +   +  +     P WL NL
Sbjct: 60  DAGISVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGDDYVVALNLARTTPTWLRNL 119

Query: 128 GFSPIKLGLDLRGGVQFLLNVDVDKAFQEQRDSMMDAVKDSLRAERLRGVVVQAMGND-- 185
           G SP+KLGLDL GGV FLL VD+DKA   +       VK  LR E++R   +  +GN   
Sbjct: 120 GASPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKSLLRKEKVRYRSLPQLGNVIQ 179

Query: 186 -AFEVKTEQPQALSHVRKYLQENYRGWEIR----QGSDQLQVQPSQQNKSEFQTATIQQN 240
             F    E+ QA + VRK    ++  +EI      G   L++  +    +E +  +I+QN
Sbjct: 180 LGFTDDAEREQARALVRK----SFTDFEITPAELNGIPVLRMALTPAKLAEIREYSIKQN 235

Query: 241 LKIMRDRIEELGITEALVQRQGEHAIRIELPGVQDPSQAKNVIGATASLAFYEAKSPTDA 300
           L  +R+R+ ELG+ E LVQRQG + I +ELPGVQD ++AK ++G TA+L F     P D+
Sbjct: 236 LTTVRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLGAGPDDS 295

Query: 301 RSYDDLILEDGNGRPVILAKRP-VLSGEHIVNARAGVDNMGMSEVNISLDHAGGKIMSDF 359
           +   ++      GRP    +R  +++G+ + +A+A  D  G  +VNI+LD  GG++MS  
Sbjct: 296 KGTTEMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHGRPQVNINLDGHGGELMSRA 355

Query: 360 SGKHIGKPMATVYREYK-----TNARGETVRSE----------KVISVATIQSQLGSQFR 404
           +  ++G+ MA ++ E +     T    + V  +          K+IS+ATIQS LGSQFR
Sbjct: 356 TRSNVGRSMAVIFIEQRPTTTYTRQMVDGVEKDVPVQTFKEDKKIISLATIQSPLGSQFR 415

Query: 405 ITGAGSMEEAQQLALLLRAGSLTAPVTIVEERTIGASLGEENIANGFAALALGMAMTLTF 464
           ITG     E+ +LALLLRAG L AP+   EERTIG SLG +NI  G  A   GM     F
Sbjct: 416 ITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGIDASLWGMLFVSIF 475

Query: 465 MALWYRRLGWVANVALLVNMACLLGLIALLPGAVLTLPGIAGLVLTVGMAVDTNVLIFER 524
           +   YR  G +A VAL +NM  LL L++LL GA LTLPGIAG+VLT+GMAVD NVLIF R
Sbjct: 476 IMAIYRFFGLIATVALALNMVMLLALMSLL-GATLTLPGIAGIVLTMGMAVDANVLIFSR 534

Query: 525 IRDKLSEGRNFAQAIDTGFDSAFSTILDANITTMITAVILYSIGNGPIQGFALTLGLGLL 584
           IR++++ G    +AI+ GFD A++ ILDAN+TT++   IL+++G GP++GFA+T+ LG+ 
Sbjct: 535 IREEIANGMTVQRAINEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTMSLGIF 594

Query: 585 TSMFSGVFASRALINLVW-GRDTRR 608
           TSMF+ +  +RA++NL++ GRD ++
Sbjct: 595 TSMFTAIMVTRAMVNLIYGGRDFKK 619