Pairwise Alignments

Query, 612 a.a., protein translocase subunit SecD from Vibrio cholerae E7946 ATCC 55056

Subject, 464 a.a., preprotein translocase subunit SecD from Synechococcus elongatus PCC 7942

 Score =  206 bits (525), Expect = 1e-57
 Identities = 135/388 (34%), Positives = 214/388 (55%), Gaps = 36/388 (9%)

Query: 242 KIMRDRIEELGITEALVQRQGEHAIRIELPGVQDPSQAKNVIGATASLAFYEAKSPTDAR 301
           +++ +R+  LG++EA++Q  G   I ++LPGV +P QA+ V+G TA L F E    T+A+
Sbjct: 62  RVIENRVNGLGVSEAVIQTAGSDKILVQLPGVSNPEQAERVLGGTAQLEFREQNPGTEAQ 121

Query: 302 ----------SYDDLILEDGNGRPVILAKRPV-----------------LSGEHIVNARA 334
                     +   L +E  NG P  +A+                    ++G+ + +A A
Sbjct: 122 VTPLQQLVSQARGALEIERRNGDPTKVAELEQTLERSQVELAKFFGPAQITGKSLKDALA 181

Query: 335 GVDNMGMS-EVNISLDHAGGKIMSDFSGKHIGKPMATVYREYKTNARGETVRSEKVISVA 393
                G + EV +  D  GG   +  +     K +A   R       G  + S  V+   
Sbjct: 182 QPTQTGNTWEVALRFDTEGGDQFAALT-----KNLAGTGRSIGIFLDGVLI-SAPVVGPE 235

Query: 394 TIQSQL-GSQFRITGAGSMEEAQQLALLLRAGSLTAPVTIVEERTIGASLGEENIANGFA 452
             Q+ + G    ITG  + E+A+ LA+ LR G+L  PV IVE RT+GA+LG ++I     
Sbjct: 236 FAQTGITGGSAVITGRFTTEQAEDLAIQLRGGALPLPVEIVENRTVGATLGRDSIQRSIY 295

Query: 453 ALALGMAMTLTFMALWYRRLGWVANVALLVNMACLLGLIALLPGAVLTLPGIAGLVLTVG 512
           A   G+ + L FM  +Y+  G +A+++L +     L    LL G  LTLPGIAG +L++G
Sbjct: 296 AGIGGLLLVLIFMVAYYQLPGLIADISLAIYALLSLAAFDLL-GVTLTLPGIAGFLLSIG 354

Query: 513 MAVDTNVLIFERIRDKLSEGRNFAQAIDTGFDSAFSTILDANITTMITAVILYSIGNGPI 572
           MAVD NVLIFER R++L  G++  +++++GF  AFS+ILD+N+TT+I    L+ + +G +
Sbjct: 355 MAVDANVLIFERTREELRAGKSLYRSVESGFYRAFSSILDSNVTTLIACGALFWLSSGLV 414

Query: 573 QGFALTLGLGLLTSMFSGVFASRALINL 600
           +GFALTL +G++ SMF+ +  SR L+ L
Sbjct: 415 KGFALTLAIGVMVSMFTAITCSRTLMFL 442