Pairwise Alignments

Query, 612 a.a., protein translocase subunit SecD from Vibrio cholerae E7946 ATCC 55056

Subject, 301 a.a., protein-export membrane protein SecF (RefSeq) from Shewanella amazonensis SB2B

 Score = 71.6 bits (174), Expect = 4e-17
 Identities = 48/179 (26%), Positives = 92/179 (51%), Gaps = 4/179 (2%)

Query: 426 LTAPVTIVEERTIGASLGEENIANGFAALALGMAMTLTFMALWYR-RLGWVANVALLVNM 484
           L   + +++  ++   +G+E    G  AL + M   L +++L +  RL   A VAL+ ++
Sbjct: 103 LDPTMQVLDRDSVSPQVGQELFEQGGLALLIAMLCILGYLSLRFEWRLAAGALVALVHDV 162

Query: 485 ACLLGLIALLPGAVLTLPGIAGLVLTVGMAVDTNVLIFERIRDKL--SEGRNFAQAIDTG 542
             +LG+ AL  G    L  +A ++  +G +++ +++I +RIR+ L         +  D  
Sbjct: 163 VLVLGVFALT-GMEFNLTVLAAVLAVLGYSLNDSIIIADRIRELLLARPKSRLTEVNDAA 221

Query: 543 FDSAFSTILDANITTMITAVILYSIGNGPIQGFALTLGLGLLTSMFSGVFASRALINLV 601
               FS  +  + TT+IT   L+ +G  P++GFA+ + +G++T  FS V     L  L+
Sbjct: 222 IVQTFSRTMVTSGTTLITVGALWLLGGAPLEGFAVAMFVGIVTGTFSSVSVGTVLPELL 280