Pairwise Alignments

Query, 612 a.a., protein translocase subunit SecD from Vibrio cholerae E7946 ATCC 55056

Subject, 315 a.a., preprotein translocase subunit SecF (RefSeq) from Shewanella amazonensis SB2B

 Score = 67.8 bits (164), Expect = 6e-16
 Identities = 73/302 (24%), Positives = 131/302 (43%), Gaps = 32/302 (10%)

Query: 323 VLSGEHIVNARAGVDNMGMSEVNISLDHAGGKIMSDFSGKHIGKPMATVYREYKTNARGE 382
           +LS   +V +   +   G   +N  LD  GG +               V  E+      E
Sbjct: 22  ILSAILVVGSLVSLATRG---INWGLDFTGGTV---------------VEMEFSKPVNLE 63

Query: 383 TVRS---EKVISVATIQSQLGSQFRI-----TGAGSMEEAQQLALLLRAGSLTAPVTIVE 434
           T+R+   E +++ A +Q+  GS   +        G   +AQ   ++ +A  L   VT   
Sbjct: 64  TLRNNLTEPLVAGAVVQN-FGSSRDVLVRLQVREGVKSDAQVRVVMAKATELDPEVTQKR 122

Query: 435 ERTIGASLGEENIANGFAALALGMAMTLTFMALWYR-RLGWVANVALLVNMACLLGLIAL 493
              +G  +G+E    G  A+ + +   L +++  +  RL   +  AL  ++   LG+ ++
Sbjct: 123 VEFVGPQVGKELAEQGGLAVLVALICILIYVSFRFEWRLAAGSVAALAHDVIVTLGVFSV 182

Query: 494 LPGAVLTLPGIAGLVLTVGMAVDTNVLIFERIRDKLSEGRNFA--QAIDTGFDSAFSTIL 551
           L      L  +AGL+  VG +++  +++F+RIR+   + R     + ++       S  +
Sbjct: 183 LQ-LEFDLTVLAGLLTVVGYSLNDTIVVFDRIRENFLKMRKGTPEEVVNNSITQTMSRTI 241

Query: 552 DANITTMITAVILYSIGNGPIQGFALTLGLGLLTSMFSGVF-ASRALINLVWGRDTRRDV 610
               TT+IT V L+  G   I GFA  L LG++   +S ++ AS   I L   R+    V
Sbjct: 242 ITTGTTLITVVALFLKGGTLIHGFATALLLGIVVGTYSSIYVASYLAIRLGINREHMMPV 301

Query: 611 RV 612
            V
Sbjct: 302 EV 303