Pairwise Alignments

Query, 612 a.a., protein translocase subunit SecD from Vibrio cholerae E7946 ATCC 55056

Subject, 853 a.a., SecD export membrane protein (NCBI) from Rhodospirillum rubrum S1H

 Score =  286 bits (732), Expect = 3e-81
 Identities = 175/512 (34%), Positives = 287/512 (56%), Gaps = 52/512 (10%)

Query: 121 PKWLGNLGFSPIKLGLDLRGGVQFLLNVDVDKAFQEQRDSMMDAVKDSLRAERLR--GVV 178
           P WL     + I LGLDL+GG   LL VD+     ++ ++M+++V+ +LR + LR  G+ 
Sbjct: 34  PDWLPQ---NRITLGLDLQGGSHLLLAVDMPAVIHDRLETMLESVRTNLRKDSLRYTGLA 90

Query: 179 VQAMG-----NDAFEVKTEQPQALSHVRKYLQENYRGWEIRQGSDQLQVQPSQQNKSEFQ 233
           V+          A +++T +      V+         + +       ++  +      + 
Sbjct: 91  VRDRSVVFTLASADDIETARGALAPLVQPDEPGKPADYGLTFDGLTGRIALADSGVQAWA 150

Query: 234 TATIQQNLKIMRDRIEELGITEALVQRQGEHAIRIELPGVQDPSQAKNVIGATASLAFYE 293
               QQ+++I+R RI+E G+ E ++ RQG   I ++LPGV DP + K ++G TA + F+ 
Sbjct: 151 DKAAQQSIEIVRRRIDETGVNEPMIARQGADRILVQLPGVSDPGRIKRLLGQTAKMTFHM 210

Query: 294 AKSPTDARSYDDLILEDGN----------------GRPVILAKRPVLSGEHIVNARAGVD 337
                      D  L DG+                G  ++++++  + G H+ +A+   D
Sbjct: 211 V---------GDRALGDGSVPAGYRLLPSADPARPGEKILVSRKVEVDGSHLTDAKPSFD 261

Query: 338 NM-GMSEVNISLDHAGGKIMSDFSGKHIGKPMATVYREYKTNARGETVRSEKVISVATIQ 396
              G   V+ S D  G +  +D +   +GKP A V               +KV+S   I+
Sbjct: 262 QQNGQWVVSFSFDGQGARRFADVTKMAVGKPFAIVL-------------DDKVVSAPVIR 308

Query: 397 SQL-GSQFRITGAGSMEEAQQLALLLRAGSLTAPVTIVEERTIGASLGEENIANGFAALA 455
             + G + +I+G+ +   A  LA+LLRAG+L AP+T+VEERT+G  LG ++I  G  A++
Sbjct: 309 EPITGGRGQISGSFTAASANDLAVLLRAGALPAPLTVVEERTVGPDLGADSIRAGMIAIS 368

Query: 456 LGMAMTLTFMALWYRRLGWVANVALLVNMACLLGLIALLPGAVLTLPGIAGLVLTVGMAV 515
           +G  + + +M ++Y   GW ANVAL+ N+A  LG ++L+  A LTLPGIAGL+L++GMAV
Sbjct: 369 VGFVLVVAYMGIFYGLFGWFANVALVFNLAITLGALSLMQ-ATLTLPGIAGLLLSLGMAV 427

Query: 516 DTNVLIFERIRDKLSEGRNFAQAIDTGFDSAFSTILDANITTMITAVILYSIGNGPIQGF 575
           D N+LI ERIR++  +GR  A +++TGF  AF+TI D+NITT+I   IL+SIG G I+GF
Sbjct: 428 DANILINERIREEAKKGRGVAASMETGFKRAFATIFDSNITTLIKMAILFSIGVGTIRGF 487

Query: 576 ALTLGLGLLTSMFSGVFASRALINLVWGRDTR 607
           A+T+ LG++ SMF+ +  +R L+ ++W R T+
Sbjct: 488 AVTISLGIIVSMFTAITVTR-LLMVIWFRRTK 518