Pairwise Alignments

Query, 612 a.a., protein translocase subunit SecD from Vibrio cholerae E7946 ATCC 55056

Subject, 351 a.a., SecF protein (NCBI) from Rhodospirillum rubrum S1H

 Score = 57.0 bits (136), Expect = 1e-12
 Identities = 64/282 (22%), Positives = 120/282 (42%), Gaps = 28/282 (9%)

Query: 339 MGMSEVNISLDHAGGKIMSDFSGKHIGKP------MATVYREYKTNARGETVRSEKVISV 392
           +G+  +++ +D  GG ++   +   +          A+V  E      GE  RS  V   
Sbjct: 38  LGLRGLDLGIDFTGGLVVEARTATAMDPVDLRQSLRASVVGEVDVTTYGEDGRSVTV--- 94

Query: 393 ATIQSQLGSQFRITGAGSMEEAQQLALLLRAGSLTAPVTIVEERTIGASLGEENIANGFA 452
                ++G Q   TG    ++A   AL     +L    T      +G ++G E    G  
Sbjct: 95  -----RVGRQ---TGG---DQAMLQALEGVKTALGEGATYRRTNLVGPTVGGEATIAGLL 143

Query: 453 ALALGMAMTLTFMAL---WYRRLGWVANVALLVNMACLLGLIALLPGAVLTLPGIAGLVL 509
            +AL + +   ++ L   W+  LG V  +AL  ++  +LGL AL       L  IA L+ 
Sbjct: 144 TVALALVLIAAYVWLRFDWHYALGVV--LALSHDVVAVLGLYALFQ-IPFDLTSIAALLT 200

Query: 510 TVGMAVDTNVLIFERIRDKLS--EGRNFAQAIDTGFDSAFSTILDANITTMITAVILYSI 567
               +++  V+IF+R+R++L+       A  ++   +   +  +  + +T++T   L  +
Sbjct: 201 VACYSINDTVVIFDRVREELALTPDAPLATVVNKSINRTLARTIVLSGSTLVTMACLALL 260

Query: 568 GNGPIQGFALTLGLGLLTSMFSGVFASRALINLVWGRDTRRD 609
           G   ++GFAL L  G +    S ++ +   +    GR    D
Sbjct: 261 GGPQLRGFALALIWGTVVGTLSSIYVAVPALMAFRGRSKTAD 302