Pairwise Alignments

Query, 612 a.a., protein translocase subunit SecD from Vibrio cholerae E7946 ATCC 55056

Subject, 553 a.a., protein-export membrane protein SecD from Phaeobacter inhibens DSM 17395

 Score =  316 bits (809), Expect = 2e-90
 Identities = 205/547 (37%), Positives = 306/547 (55%), Gaps = 50/547 (9%)

Query: 93  TQQSQARNALDALVKEGDTITYSYVSVAPKWLGNLGFSPIKLGLDLRGGVQFLLNVDVDK 152
           T+  QA +A   ++ +G++   + + VA +W   +  S + LGLDLRGG   L  V V  
Sbjct: 30  TRVEQANDAAAEIITKGESP--ARLDVAGQWPSFMPSSLVNLGLDLRGGAHLLAEVKVAD 87

Query: 153 AFQEQRDSMMDAVKDSLRAERLRGVVVQAMGNDAFE----VKTEQPQALSHVRKYLQENY 208
            +  + D++   V+D+LR ER  G V       A E    +K  +P+ ++     ++   
Sbjct: 88  VYGARMDALWPEVRDALRPER--GEVGTFRRQQAPEGQIRLKISKPEGMARALAVVRGLA 145

Query: 209 RGWEIRQGS-----------DQLQVQPSQQNKSEFQTATIQQNLKIMRDRIEELGITEAL 257
                  G+           D L V+ S+Q K      T++Q L+I+R RI+E+G  E  
Sbjct: 146 NPITSLTGAGATDITVSGTGDILTVELSEQEKLASDDRTVRQALEIIRRRIDEVGTREPT 205

Query: 258 VQRQGEHAIRIELPGVQDPSQAKNVIGATASLAFYEAKSPTDARSYDDLILEDGNGRPVI 317
           +QRQG   I I++PG+   S+ K +IG TA L F    +P   R   D     G G  V+
Sbjct: 206 IQRQGSDRILIQVPGIGSASELKEIIGTTAQLTF----NPVVGRG-TDADANAGVGNKVV 260

Query: 318 -----------LAKRPVLSGEHIVNARAGVDNMGMSEVNISLDHAGGKIMSDFSGKHIGK 366
                      +   PV++GE +V+A+   D  G   V+   +  G +   D++ ++IG 
Sbjct: 261 PSLDEDGVFYTVEAAPVVTGEELVDAQPSFDQNGRPAVSFRFNTTGARKFGDYTAENIGS 320

Query: 367 PMATVYREYKTNARGETVRSEKVISVATIQSQL-GSQFRITGAGSMEEAQQLALLLRAGS 425
           P A V               E+V+S   IQS + G    ITG  ++EE+  +A+LLRAG+
Sbjct: 321 PFAIVL-------------DEEVVSAPVIQSHIPGGSGIITGNFTIEESTNMAILLRAGA 367

Query: 426 LTAPVTIVEERTIGASLGEENIANGFAALALGMAMTLTFMALWYRRLGWVANVALLVNMA 485
           L A +  +EERTIG  LG+++I  G  A  +     L FMAL Y   G  AN+AL++N+A
Sbjct: 368 LPAGLEFLEERTIGPELGQDSIDAGKVATIVAFVGVLVFMALSYGLFGVFANIALILNIA 427

Query: 486 CLLGLIALLPGAVLTLPGIAGLVLTVGMAVDTNVLIFERIRDKLSEGRNFAQAIDTGFDS 545
            + G ++L+ GA LTLPGIAG+VLTVGMAVD NVLIFERIR++L  GR  A+AID G+  
Sbjct: 428 LIFGALSLI-GATLTLPGIAGIVLTVGMAVDANVLIFERIREELKAGRGPARAIDEGYSK 486

Query: 546 AFSTILDANITTMITAVILYSIGNGPIQGFALTLGLGLLTSMFSGVFASRALINLVWGRD 605
           A S ILDANITT ITAVIL+++G+GP++GFA+TLGLG++TS+F+ +F +R +I + + R 
Sbjct: 487 ALSAILDANITTFITAVILFAMGSGPVRGFAITLGLGIMTSVFTAIFVTRVIIVMWFERR 546

Query: 606 TRRDVRV 612
             + + V
Sbjct: 547 RPKTIEV 553