Pairwise Alignments

Query, 612 a.a., protein translocase subunit SecD from Vibrio cholerae E7946 ATCC 55056

Subject, 616 a.a., preprotein translocase subunit SecD (RefSeq) from Shewanella loihica PV-4

 Score =  437 bits (1123), Expect = e-127
 Identities = 247/609 (40%), Positives = 371/609 (60%), Gaps = 20/609 (3%)

Query: 13  LINHYSAWKYVVLVTTIIILTLSAIPTWYGEQPSIQLQSKDATSVLRNVP-ELTQLLNKQ 71
           ++N Y  WK +++   I +    AIP  +GE  ++Q+ +     V  +   E+T +L+ +
Sbjct: 1   MLNKYPMWKNLMVALIIAVGAFYAIPNLFGEDHAVQVVATRGAEVNASTQSEVTDILSAK 60

Query: 72  NIQADEITQQGDNTTLVFANETQQSQARNALDALVKEGDTITYSYVSVAPKWLGNLGFSP 131
            I       +     +  A+  QQ  A+ A+  ++ +   +  +     P+WL ++G SP
Sbjct: 61  GIAVKRSELENGQLLVRVADADQQLLAKEAIAEVLGDKYIVALNLAPATPQWLESMGGSP 120

Query: 132 IKLGLDLRGGVQFLLNVDVDKAFQEQRDSMMDAVKDSLRAERLRGVVVQAMGNDAFEVKT 191
           +KLGLDLRGGV FL+ VD+ +A ++  ++ +   +  LR E++R   ++       E+K 
Sbjct: 121 MKLGLDLRGGVHFLMEVDMSEAIRKMTEAKIADFRTDLRGEKIRYAGIRNTPK-GIEIKF 179

Query: 192 EQPQALSHVRKYLQENYRGW---EIRQGSD-QLQVQPSQQNKSEFQTATIQQNLKIMRDR 247
              + L+   ++L+         +   GSD  L    S+    + +   +QQN+  +R+R
Sbjct: 180 RDAENLAKAERFLKSRTNEMVFVDASSGSDFMLLANMSEIYLKQVKEEALQQNITTLRNR 239

Query: 248 IEELGITEALVQRQGEHAIRIELPGVQDPSQAKNVIGATASLAFYEAKSPTDAR------ 301
           + ELG+ E +VQRQG   I +ELPGVQD ++AK+++GATAS+ F+      DA       
Sbjct: 240 VNELGVAEPVVQRQGAERIIVELPGVQDTARAKDILGATASIEFHMVDEKADAAAIAAGR 299

Query: 302 -SYDDLILEDGNGRPVILAKRPVLSGEHIVNARAGVDNMGMSEVNISLDHAGGKIMSDFS 360
            S    I +   G  V L K  +L+G+HI  A+   D     +V+I+LD  GG I S+ +
Sbjct: 300 VSPGSQIYDRREGGKVALQKEVMLTGDHIQGAQPSFDEYSRPQVSINLDSKGGSIFSNVT 359

Query: 361 GKHIGKPMATVYREYKTNARGETVRS------EKVISVATIQSQLGSQFRITGAGSMEEA 414
             +IGKPMAT++ EYK N       S      E+VISVATIQ++LG  F I G     EA
Sbjct: 360 KDNIGKPMATLFIEYKDNGAKNPDGSVKMDKIEEVISVATIQARLGRNFVINGLDH-SEA 418

Query: 415 QQLALLLRAGSLTAPVTIVEERTIGASLGEENIANGFAALALGMAMTLTFMALWYRRLGW 474
           Q LALLLRAG+L APV+IVEERTIG SLG ENI NG  A+  GMA+ L FM ++YR  G 
Sbjct: 419 QSLALLLRAGALIAPVSIVEERTIGPSLGAENIDNGLQAMIWGMAVVLIFMLVYYRGFGL 478

Query: 475 VANVALLVNMACLLGLIALLPGAVLTLPGIAGLVLTVGMAVDTNVLIFERIRDKLSEGRN 534
           +AN+AL  N+  ++G+++++PGAVLTLPGIAG+VLTVGMAVD NVLI+ERIR++L  GR+
Sbjct: 479 IANLALTANLVMVVGVMSMIPGAVLTLPGIAGMVLTVGMAVDGNVLIYERIREELRAGRS 538

Query: 535 FAQAIDTGFDSAFSTILDANITTMITAVILYSIGNGPIQGFALTLGLGLLTSMFSGVFAS 594
             QAI  G+ +AFSTI DANITT +TA+IL+++G G ++GFA+TL +G+ TSMF+ +  +
Sbjct: 539 VQQAIHEGYGNAFSTIADANITTFMTALILFAVGTGAVKGFAVTLMIGIATSMFTAIVGT 598

Query: 595 RALINLVWG 603
           R+++N +WG
Sbjct: 599 RSIVNAIWG 607