Pairwise Alignments

Query, 612 a.a., protein translocase subunit SecD from Vibrio cholerae E7946 ATCC 55056

Subject, 532 a.a., preprotein translocase subunit SecD (RefSeq) from Desulfovibrio vulgaris Miyazaki F

 Score =  286 bits (732), Expect = 2e-81
 Identities = 175/490 (35%), Positives = 271/490 (55%), Gaps = 36/490 (7%)

Query: 130 SPIKLGLDLRGGVQFLLNVDVDKAFQEQRDSMMDAVKDSLRAERLRGVVVQAMGNDAFEV 189
           S I LGLDL GG+   L VDVDKA +     M   ++ S R + +  +  + +  D  E 
Sbjct: 42  SAISLGLDLMGGIHLTLGVDVDKAVENSLTQMGQDIRTSAREKDVFVLRPRVLPGDRIEF 101

Query: 190 KTEQPQALSHVRKYLQENYRGWEIR--QGSDQLQVQPSQQNKSEFQT----ATIQQNLKI 243
              + +    + + L + +    +   Q +D  Q++     K E++       ++Q +K 
Sbjct: 102 VLAKAEQRDVLGELLAKQFHQLSVAAPQTTDDGQLRYVATMKPEYRKNISDMALEQAVKT 161

Query: 244 MRDRIEELGITEALVQRQGEHAIRIELPGVQDPSQAKNVIGATASLAFYEAKSPTDARSY 303
           +R+RI++ G+ E  +++Q ++ I+I+LPG+ D  +A  +IG TA L F+  +   DA   
Sbjct: 162 IRNRIDQFGVAEPDIRKQQDNRIQIQLPGLHDTQRAIQIIGQTAHLEFHIVRDDVDAEKA 221

Query: 304 DDLILEDGNG---------------RPVILAKRPVLSGEHIVNARAGVDNMGMSEVNISL 348
              IL  G                  PV++ K  VL+GE++ +AR G DN   + V ++ 
Sbjct: 222 ARGILPPGTEVRPMIRRGADGSQAETPVVVDKEAVLTGEYVADARPGFDNFNQAYVMLTF 281

Query: 349 DHAGGKIMSDFSGKHIGKPMATVYREYKTNARGETVRSEKVISVATIQSQLGS-QFRITG 407
           +  G  +    + +++ K +A V                KV S   IQ ++G  +  ITG
Sbjct: 282 NSRGAAMFERITQENVRKRLAIVL-------------DGKVYSAPVIQEKIGGGRASITG 328

Query: 408 AGSMEEAQQLALLLRAGSLTAPVTIVEERTIGASLGEENIANGFAALALGMAMTLTFMAL 467
             S  EAQ LA++LRAGSL APV+++EERT+G SLG+E+I  G  A  +G A  + FM +
Sbjct: 329 KFSTAEAQDLAIVLRAGSLPAPVSVLEERTVGPSLGQESIDKGILAAVVGGAAVMIFMVV 388

Query: 468 WYRRLGWVANVALLVNMACLLGLIALLPGAVLTLPGIAGLVLTVGMAVDTNVLIFERIRD 527
           +Y   G +A+V L   +  +L  +A   GA LTLPG+AG+VLT+GMAVD NVLI+ERIR+
Sbjct: 389 YYGVSGLIADVMLCFTVLLILAGMAAF-GATLTLPGLAGIVLTLGMAVDANVLIYERIRE 447

Query: 528 KLSEGRNFAQAIDTGFDSAFSTILDANITTMITAVILYSIGNGPIQGFALTLGLGLLTSM 587
           +L +G     AI  GFD A   I D+N+TT+I + ILY  G GP++GFA+TL LG++ SM
Sbjct: 448 ELRKGHTVLSAIHEGFDRATLAITDSNLTTIIASAILYQFGTGPVRGFAVTLSLGIIASM 507

Query: 588 FSGVFASRAL 597
           F+ +F SR +
Sbjct: 508 FTAIFVSRVV 517