Pairwise Alignments

Query, 612 a.a., protein translocase subunit SecD from Vibrio cholerae E7946 ATCC 55056

Subject, 388 a.a., preprotein translocase subunit SecD from Methanococcus maripaludis S2

 Score = 53.5 bits (127), Expect = 2e-11
 Identities = 57/216 (26%), Positives = 91/216 (42%), Gaps = 20/216 (9%)

Query: 382 ETVRSEKVISVATIQSQLGS-----QFRITGAGS------MEEAQQLALLLRAGSLTAPV 430
           E    EK IS   + + L          IT AGS      ++EA  +   L++GSL   V
Sbjct: 160 ELYMDEKAISAPLLSADLADGNIHQNQVITVAGSNPTEEDIDEAWVIYTALKSGSLPVKV 219

Query: 431 TIVEERTIGASLGEENIANGFAALALGMAMTLTFMALWYRRLGWVANVAL--LVNMACLL 488
            I    ++  +LG E I     A           ++  Y+    V  + +     +  +L
Sbjct: 220 HIEYISSVSPTLGSEFIKGSVIAGIFAFIAVAAVISFRYKNPKIVLPILITGFSEVLLIL 279

Query: 489 GLIALLPGAVLTLPGIAGLVLTVGMAVDTNVLIFERIRDKLSEGRNFAQAIDTGFDSAFS 548
           G  +L+    L L  IAG++  VG  VD  ++I     D+   G   A+ +      AF 
Sbjct: 280 GFASLIDWK-LDLASIAGIIAAVGTGVDHQIVI----TDETISGE--AKKVTKSIKRAFF 332

Query: 549 TILDANITTMITAVILYSIGNGPIQGFALTLGLGLL 584
            I  A  TT+   + L+ +G G ++GFA+T   G+L
Sbjct: 333 IIFGAAATTIAAMLPLFVMGIGMLKGFAITTIAGVL 368



 Score = 28.9 bits (63), Expect = 4e-04
 Identities = 16/80 (20%), Positives = 36/80 (45%), Gaps = 1/80 (1%)

Query: 127 LGFSPIKLGLDLRGGVQFLLNVDVDKAFQEQRDSMMDAVKDSLRAERLRGVVVQAMGNDA 186
           + F  I  G+DL GG   +L  + + + + +  ++ + +   L    L  V +   G+D 
Sbjct: 23  IAFKGISFGVDLSGGSTIVLQTESELS-ESEMTTVNEILTSRLNTNGLSDVRIYPRGSDE 81

Query: 187 FEVKTEQPQALSHVRKYLQE 206
             ++  +   L  ++K L +
Sbjct: 82  IVIEIPESADLERIQKILTQ 101