Pairwise Alignments

Query, 612 a.a., protein translocase subunit SecD from Vibrio cholerae E7946 ATCC 55056

Subject, 616 a.a., protein-export membrane protein SecD (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  447 bits (1150), Expect = e-130
 Identities = 249/611 (40%), Positives = 380/611 (62%), Gaps = 24/611 (3%)

Query: 13  LINHYSAWKYVVLVTTIIILTLSAIPTWYGEQPSIQLQSKDATSVLRNVP-ELTQLLNKQ 71
           ++N Y  WK +++V  I I    A+P  +GE  ++Q+ +     V  +    + +LL  +
Sbjct: 1   MLNKYPMWKNIMVVLIIAIGCFYAVPNLFGEDHAVQVVATRGAEVTASTQARVNELLASK 60

Query: 72  NIQADEITQQGDNTTLVFANETQQSQARNALDALVKEGDTITYSYVSVAPKWLGNLGFSP 131
            I       +     +   N  QQ  A+  +   + +  T+  +     PKWL ++G SP
Sbjct: 61  GIAVKRSELEKGQLLVRVQNADQQLLAKEVIAEALGDKFTVALNLAPATPKWLESMGGSP 120

Query: 132 IKLGLDLRGGVQFLLNVDVDKAFQEQRDSMMDAVKDSLRAERLR--GVVVQAMGNDAFEV 189
           +KLGLDLRGGV FL+ VD+ +A ++  ++ +   +  LR E++R  G+ + A G    E+
Sbjct: 121 MKLGLDLRGGVHFLMEVDMGEAIRKMEEAKVADFRSQLREEKIRYAGIRINAQG---IEI 177

Query: 190 KTEQPQALSHVRKYLQENYRGW---EIRQGSD-QLQVQPSQQNKSEFQTATIQQNLKIMR 245
           K    ++L+   ++L+         ++ +G D  LQ   S+    + +   +QQN+  +R
Sbjct: 178 KFRDAESLASAERFLKSRSNDMVFSDVSKGEDFALQAVMSETYLKQVKEEALQQNITTIR 237

Query: 246 DRIEELGITEALVQRQGEHAIRIELPGVQDPSQAKNVIGATASLAFYEAKSPTDARSYD- 304
           +R+ ELG++E +VQRQG   I +ELPGVQD ++AK ++GATAS+ F+      DA +   
Sbjct: 238 NRVNELGVSEPVVQRQGAERIIVELPGVQDTARAKEILGATASIEFHMVDDKADANAAQA 297

Query: 305 ------DLILEDGNGRPVILAKRPVLSGEHIVNARAGVDNMGMSEVNISLDHAGGKIMSD 358
                   + +   G  V+L K  +L+G+HI  A+   D     +V+I+LD  GG I S+
Sbjct: 298 GRVPAGSEVYQRREGGQVVLKKEVMLTGDHITGAQPSFDQYSRPQVSINLDAKGGTIFSN 357

Query: 359 FSGKHIGKPMATVYREYKT----NARGET--VRSEKVISVATIQSQLGSQFRITGAGSME 412
            +  +IGKPMAT++ EYK     NA G    ++ E+VISVATIQ++LG  F ITG  S  
Sbjct: 358 VTKDNIGKPMATLFIEYKDSGERNADGSVKMLKIEEVISVATIQARLGRNFVITGL-SHG 416

Query: 413 EAQQLALLLRAGSLTAPVTIVEERTIGASLGEENIANGFAALALGMAMTLTFMALWYRRL 472
           EAQ LALLLRAG+L APV+IVEERTIG SLG ENIA+G  A+   M   + FM ++YR  
Sbjct: 417 EAQNLALLLRAGALIAPVSIVEERTIGPSLGAENIASGINAMLWSMGAVVLFMLIYYRAF 476

Query: 473 GWVANVALLVNMACLLGLIALLPGAVLTLPGIAGLVLTVGMAVDTNVLIFERIRDKLSEG 532
           G +AN+AL +N+  ++G+++++PGAVLTLPGIAG+VLT+GMAVD NVLI+ERIRD++  G
Sbjct: 477 GLIANIALTMNLVMIVGVMSMIPGAVLTLPGIAGMVLTIGMAVDGNVLIYERIRDEIRAG 536

Query: 533 RNFAQAIDTGFDSAFSTILDANITTMITAVILYSIGNGPIQGFALTLGLGLLTSMFSGVF 592
           R+  QAI  G+ +AFS+I D+NITT ITA+IL+++G+G ++GFA+TL +G+ TSMF+ + 
Sbjct: 537 RSVQQAIQEGYANAFSSIADSNITTFITALILFAVGSGAVKGFAVTLMIGIATSMFTAIV 596

Query: 593 ASRALINLVWG 603
            +RA++N VWG
Sbjct: 597 GTRAIVNAVWG 607