Pairwise Alignments

Query, 612 a.a., protein translocase subunit SecD from Vibrio cholerae E7946 ATCC 55056

Subject, 315 a.a., protein-export membrane protein SecF (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 57.0 bits (136), Expect = 1e-12
 Identities = 44/192 (22%), Positives = 86/192 (44%), Gaps = 4/192 (2%)

Query: 409 GSMEEAQQLALLLRAGSLTAPVTIVEERTIGASLGEENIANGFAALALGMAMTLTFMALW 468
           G   + Q + ++  A  L   V       +G  +G+E    G  A+ + +   + ++A  
Sbjct: 97  GISSDVQVVEIVKFAQQLDPNVVQKRVEFVGPQVGKELAEQGGLAVLVALICIMIYIAFR 156

Query: 469 YR-RLGWVANVALLVNMACLLGLIALLPGAVLTLPGIAGLVLTVGMAVDTNVLIFERIRD 527
           +  RL   A  AL  ++   LG+ +L       L  +AG++  VG +++  +++F+R+R+
Sbjct: 157 FEWRLATGAVAALAHDVMVTLGVFSLTQ-MEFDLTVLAGVLTVVGYSLNDTIVVFDRVRE 215

Query: 528 KLSEGRNFA--QAIDTGFDSAFSTILDANITTMITAVILYSIGNGPIQGFALTLGLGLLT 585
              + R     + ++       S  +    TT++  V L+  G   I GFA  L LG+  
Sbjct: 216 NFLKMRKSEPEEVVNVSITQTMSRTIITMGTTLVVVVALFLSGGSMIHGFAAALLLGISV 275

Query: 586 SMFSGVFASRAL 597
             +S V+ +  L
Sbjct: 276 GTYSSVYVATYL 287