Pairwise Alignments

Query, 612 a.a., protein translocase subunit SecD from Vibrio cholerae E7946 ATCC 55056

Subject, 294 a.a., protein-export membrane protein SecF (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 60.5 bits (145), Expect = 1e-13
 Identities = 48/195 (24%), Positives = 95/195 (48%), Gaps = 11/195 (5%)

Query: 406 TGAGSMEEAQQLALLLRAGSLTAPVTIVEERTIGASLGEENIANGFAALALGMAMTLTFM 465
           T    ++ AQ LA L         V ++    +G  +G+E    G  AL + M   L ++
Sbjct: 88  TAQSHVDIAQTLAPL-------GEVQVLNTSVVGPQVGKELAEQGGLALLVAMLAILGYL 140

Query: 466 ALWYR-RLGWVANVALLVNMACLLGLIALLPGAVLTLPGIAGLVLTVGMAVDTNVLIFER 524
           +  +  RL   A  AL+ ++  +L   +L       L  +A ++  +G +++ +++I +R
Sbjct: 141 SYRFEWRLASGALFALVHDVMFVLAFFSLTQ-MEFNLTVLAAVLAILGYSLNDSIIIADR 199

Query: 525 IRDKLSEGRNFA--QAIDTGFDSAFSTILDANITTMITAVILYSIGNGPIQGFALTLGLG 582
           IR+ L      A  +  +    + FS  +  + TT++T   L+ +G GP++GF++ + +G
Sbjct: 200 IRELLIAKPKLAIQEINNQAIVATFSRTMVTSGTTLMTVGALWIMGGGPLEGFSIAMFIG 259

Query: 583 LLTSMFSGVFASRAL 597
           +LT  FS +    +L
Sbjct: 260 ILTGTFSSISVGTSL 274